Trichodesmium erythraeum IMS101

Gram-negativeFilamentousMotileAerobic

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Oscillatoriales

Family

Microcoleaceae

Genus

Trichodesmium

Description

Trichodesmium erythraeum occurs throughout the open waters of oligotrophic tropical and subtropical oceans and forms filaments (trichomes) of 20 to 200 cells that can further aggregate into colonies several millimeters across. Trichodesmium can form blooms in excess of 100,000 km2, which are most commonly composed of Trichodesmium erythraeum and Trichodesmium thiebautii. A marine diazotroph, it fixes nitrogen in non-granulated cells. It is also able to induce genes under phosphate stress that would allow it utilize organic phosphonate, an ability so far unknown in marine cyanobacteria. The colonies vary in color from yellowish-brown to deep red because they contain phycoerythrin as their primary light harvesting pigment. Trichodesmium spp. are planktonic and owe their buoyancy to the possession of gas vacuoles. Trichodesmium erythraeum (strain IMS101) produces a small intracellular cyclic peptide dubbed trichamide, which in its pure form is not neurotoxic in mice, however a crude preparation of the peptide is neurotoxic. (HAMAP: TRIEI)

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderOscillatoriales
FamilyMicrocoleaceae
GenusTrichodesmium
SpeciesTrichodesmium erythraeum
StrainIMS101

Profile

Physiology
Gram staining propertiesNegative
ShapeFilamentous
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Trichodesmium erythraeum IMS101
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Trichodesmium erythraeum IMS101


Gene Summary

Adenine Count

2551359 bp

Thymine Count

2552602 bp

Guanine Count

1325668 bp

Cytosine Count

1320479 bp

Genome Length

7750108 bp

Protein-coding Genes

5402 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaTERY_RS00005Not Available+27 - 139751890.4
hypothetical proteinTERY_RS29415Not Available-1489 - 230529114.7
hypothetical proteinTERY_RS35710Not Available+5238 - 53604874.12
reverse transcriptase n-terminal domain-containing proteinTERY_RS35715Not Available+6713 - 68294553.55
hypothetical proteinTERY_RS26655Not Available+7096 - 72575570.71
reverse transcriptase n-terminal domain-containing proteinTERY_RS26660Not Available+7934 - 81227498.56
hypothetical proteinTERY_RS00025Not Available+9072 - 937710865.7
reverse transcriptase n-terminal domain-containing proteinTERY_RS35720Not Available+10094 - 102736756.28
dna polymerase iii subunit betaTERY_RS00030Not Available+10371 - 1097322270.7
is630 family transposaseTERY_RS26670Not Available-11374 - 1182917923.7

Displaying genes 1 – 10 of 5449 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

63 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 1–10 of 63 metabolites