Polaromonas sp. JS666

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Polaromonas

Description

Polaromonas (strain JS666 / ATCC BAA-500), a member of the family Comamonadaceae in the beta-proteobacteria, is a novel, aerobic, cis-dichloroethene (cDCE)-assimilating organism with optimum growth at 20-25 degrees C. It is closely related to the Antarctic marine isolate Polaromonas vacuolata. The substantial phylogenetic distance from other known aerobic alkene-assimilating bacteria suggests a novel biochemistry for cDCE oxidation. Polaromonas is the only aerobic organism known to use cDCE for energy and growth. cDCE is a common groundwater contaminant derived mainly from incomplete anaerobic reductive dechlorination of the widely used chlorinated solvents tetrachloroethene and trichloroethene. The toxicity and suspected carcinogenicity of cDCE qualifies it as an EPA priority pollutant. Since growth-coupled oxidation of cDCE does not appear to be common at field sites, JS666 is a prime candidate for bioremediation at sites where cDCE has migrated into aerobic zones. Recently, a Polaromonas was reported to be the organism responsible for in situ biodegradation of naphthalene at a coal-tar-contaminated site. Closely related strains have also been found recently in a variety of contaminated sites, but their roles are unknown. The recent isolation of the above strains suggests that members of the genus Polaromonas play a major role in the subsurface degradation of environmental contaminants that has been overlooked to date because of an emphasis on mesophilic bacteria. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusPolaromonas
SpeciesPolaromonas sp. JS666
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Polaromonas sp. JS666
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Polaromonas sp. JS666


Gene Summary

Adenine Count

979163 bp

Thymine Count

972376 bp

Guanine Count

1625109 bp

Cytosine Count

1623616 bp

Genome Length

5200264 bp

Protein-coding Genes

4911 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Utp-glucose-1-phosphate uridylyltransferaseBPRO_RS18570Not Available+3931400 - 393229932803.8
sulfurtransferase tusa family proteinBPRO_RS18575Not Available-3932369 - 39325968339.11
nudix domain-containing proteinBPRO_RS18580Not Available-3932698 - 393323120275.2
Putative cysteine synthaseBPRO_RS18585Not Available-3933321 - 393422332601.1
Trna-leu;Not AvailableNot Available+3934264 - 3934348Not Available
flavin reductase family proteinBPRO_RS18595Not Available-3934561 - 39347948249.02
Dna adenine methylaseBPRO_RS18600Not Available-3935073 - 393585829861.2
AttlNot AvailableNot Available+3935796 - 3935809Not Available
Com family dna-binding transcriptional regulatorBPRO_RS28695Not Available-3935866 - 39360907931.33
Hypothetical proteinBPRO_RS29720Not Available-3936193 - 39363546159.59

Displaying genes 1 – 10 of 5003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1805 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 1805 metabolites