Novosphingobium aromaticivorans DSM 12444

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium (Sphingomonas) aromaticivorans strain DSM 12444 is an alphaproteobacterium and is characterized as a Gram-negative, non-spore forming rod displaying a single polar flagellum when it is motile. It is yellow pigmented and obligately aerobic. Unlike typical gram-negative bacteria, it does not have lipopolysaccharide, but rather glycosphingolipid, which is usually a membrane component of eukaryotic cells. The thermoreversible gel formation and solution viscosity properties of these glycosphingolipids (sphingans) make them of technical interest and useful in applications for a wide range of food and pharmaceutical products. The role of sphingans has been proposed to be important in colonization of eukaryotic organisms including plants, marine organisms, and humans by Novosphingobium. N. aromaticivorans strains have been isolated from a wide variety of sources including soil, both marine and fresh waters, marine life, and from plants. Many of the first isolates assigned to this genus (S. paucimobilis) were derived from human clinical specimens or water samples taken from hospital environments and members of this species have been subsequently shown to behave as opportunistic pathogens. More recently, N. aromaticivorans has been linked to the death of coral reefs off the Florida coast. Although there is an emerging role of Novosphingobium species in disease, members of this genus are best known for their ability to degrade a wide variety of aromatic hydrocarbons. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium aromaticivorans
StrainDSM 12444

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Novosphingobium aromaticivorans DSM 12444
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Novosphingobium aromaticivorans DSM 12444


Gene Summary

Adenine Count

622120 bp

Thymine Count

618992 bp

Guanine Count

1159382 bp

Cytosine Count

1161090 bp

Genome Length

3561584 bp

Protein-coding Genes

3326 genes

Non-Coding Genes

153 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+665414 - 665453Not Available
Phage integrase family site specific recombinaseSARO_RS03085Not Available-665462 - 66661342569.4
hypothetical proteinSARO_RS03090Not Available-666617 - 6668388066.42
hypothetical proteinSARO_RS03095Not Available-666842 - 66716212003.6
MethyltransferaseSARO_RS03100Not Available-667159 - 66777923381.0
Major capsid proteinSARO_RS03105Not Available-667779 - 66830019755.6
Hypothetical proteinSARO_RS03110Not Available-668297 - 66898325752.1
Hypothetical proteinSARO_RS03115Not Available-668987 - 66950219665.4
Hypothetical proteinSARO_RS03120Not Available-669506 - 66982311873.8
Hypothetical proteinSARO_RS20090Not Available-669827 - 67128453558.2

Displaying genes 1 – 10 of 3911 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

505 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 505 metabolites