Sulfurimonas denitrificans DSM 1251

Gram-negativeSpirillaNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Sulfurimonadaceae

Genus

Sulfurimonas

Description

Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) is a sulfur-oxidizing, chemolithoautotroph Epsilonproteobacterium. Its genome was sequenced in order to have a representative of the sulfur-oxidizing Epsilonproteobacteria present in the coastal marine sediments in addition to the genomes of the deep-sea hydrothermal vents sulfur-oxidizing Epsilonproteobacteria Nitratiruptor sp. (strain SB155-2) and Sulfurovum sp. (strain NBC37-1). Based on its phenotype, S. denitrificans was originally named Thiomicrospora denitrificans. When the polyphyletic nature of Thiomicrospora was revealed, with members from both the Gammaproteobacteria and Epsilonproteobacteria, Thiomicrospora denitrificans was removed from the genus Thiomicrospora and placed within the genus Sulfurimonas. Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) has one of the largest genomes among the Epsilonproteobacteria sequenced to date, which likely provides the metabolic versatility necessary for survival in a habitat more complex than found in a metazoan host. Close relatives of S. denitrificans are motile while strain ATCC 33889 / DSM 1251 is nonmotile probably because of the interruption of a flagellar biosynthesis operon by a transposon. This nonmotility seems to have been acquired recently. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilySulfurimonadaceae
GenusSulfurimonas
SpeciesSulfurimonas denitrificans
StrainDSM 1251

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature20
Temperature rangeMesophilic
HabitatMarine- Mud
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Sulfurimonas denitrificans DSM 1251


Gene Summary

Adenine Count

726668 bp

Thymine Count

716192 bp

Guanine Count

381751 bp

Cytosine Count

376950 bp

Genome Length

2201561 bp

Protein-coding Genes

2155 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSUDEN_RS00005Not Available+15 - 132249943.6
dna polymerase iii subunit betaSUDEN_RS00010Not Available+1490 - 255740214.5
dna topoisomerase (atp-hydrolyzing) subunit bSUDEN_RS00015Not Available+2707 - 501686629.5
preq(1) synthaseSUDEN_RS00020Not Available+5041 - 541814847.8
cca trna nucleotidyltransferaseSUDEN_RS00025Not Available-5407 - 664247272.1
translational gtpase typaSUDEN_RS00030Not Available+6798 - 860066912.6
tonb-dependent receptorSUDEN_RS00035Not Available+8748 - 1067372367.5
7tm diverse intracellular signaling domain-containing proteinSUDEN_RS00040Not Available-10712 - 1260472785.2
response regulatorSUDEN_RS00045Not Available-12601 - 1327526169.9
filamentous hemagglutinin n-terminal domain-containing proteinSUDEN_RS11360Not Available+13468 - 16977121328.0

Displaying genes 1 – 10 of 2214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1671 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1671 metabolites