Nitrobacter winogradskyi Nb-255

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Nitrobacter

Description

Nitrobacter winogradskyi lives in soils, fresh water or marine environments. It uses inorganic compounds as energy sources. It oxidizes ammonia to nitrite and nitrite to an end product of nitrate. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusNitrobacter
SpeciesNitrobacter winogradskyi
StrainNb-255

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Nitrobacter winogradskyi Nb-255
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceLithotroph
PathogenicityNo

Genome Summary

Nitrobacter winogradskyi Nb-255

Accession NumberNC_007406.1

Gene Summary

Adenine Count

647647 bp

Thymine Count

643481 bp

Guanine Count

1052382 bp

Cytosine Count

1058583 bp

Genome Length

3402093 bp

Protein-coding Genes

3039 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Transcriptional regulatorNWI_RS04380Not Available-922284 - 9224997933.81
dna -binding domain-containing proteinNWI_RS04385Not Available+922723 - 92298910204.0
Hypothetical proteinNWI_RS04390Not Available+923230 - 9234728639.26
RepaNWI_RS04395Not Available+923481 - 92434433236.8
Dna adenine methylase moxNWI_RS04400Not Available+924490 - 92524827586.8
duf2840 domain-containing proteinNWI_RS04405Not Available+925245 - 92573718501.3
s26 family signal peptidaseNWI_RS04410Not Available+925734 - 92629420400.6
Putative transglycosylaseNWI_RS04415Not Available+926329 - 92733935642.6
AttrNot AvailableNot Available+935932 - 935943Not Available
Major capsid proteinNWI_RS06030Not Available+1276327 - 127758044834.0

Displaying genes 51 – 60 of 3207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

153 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da

Displaying 1–10 of 153 metabolites