Prochlorococcus marinus str. NATL2A

Gram-negativeCocciNon-motile

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Prochlorococcaceae

Genus

Prochlorococcus

Description

Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilyProchlorococcaceae
GenusProchlorococcus
SpeciesProchlorococcus marinus
StrainNATL2A

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Prochlorococcus marinus str. NATL2A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhotosynthetic
PathogenicityNo

Genome Summary

Prochlorococcus marinus str. NATL2A


Gene Summary

Adenine Count

599176 bp

Thymine Count

596441 bp

Guanine Count

324295 bp

Cytosine Count

322987 bp

Genome Length

1842899 bp

Protein-coding Genes

2058 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dna polymerase iii subunit betaPMN2A_RS00015Not Available+189 - 134942092.0
prc-barrel domain-containing proteinPMN2A_RS00020Not Available+1352 - 212229622.9
phosphoribosylformylglycinamidine synthase subunit purlPMN2A_RS00025Not Available+2126 - 453787574.9
amidophosphoribosyltransferasePMN2A_RS00030Not Available+4599 - 605654502.1
dna topoisomerase (atp-hydrolyzing) subunit aPMN2A_RS00035Not Available-6053 - 853693451.3
tetratricopeptide repeat proteinPMN2A_RS00040Not Available-8620 - 948633015.3
trna epoxyqueuosine(34) reductase quegPMN2A_RS00045Not Available-9492 - 1043035867.1
duf502 domain-containing proteinPMN2A_RS00050Not Available+10620 - 1134526427.2
transcription antitermination factor nusbPMN2A_RS00055Not Available+11363 - 1198923892.2
signal recognition particle-docking protein ftsyPMN2A_RS00060Not Available+11986 - 1328147402.3

Displaying genes 1 – 10 of 2103 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

215 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 215 metabolites