Thermobifida fusca YX

Gram-positiveBacilliMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Thermobifida

Description

Thermobifida fusca, formerly known as Thermomonaspora fusca, is a moderate thermophilic soil bacterium (growth temperature 55 degrees Celsius) that is a major degrader of plant cell walls in heated organic materials such as compost heaps, rotting hay, manure piles or mushroom growth medium. It produces spores, which can be allergenic and causes the Farmer's lung disease (extrinsic allergic alveolitis). Its extracellular enzymes, including cellulases, have been studied because of their thermostability, broad pH range and high activity. It appears to degrade all major plant cell wall polymers except lignin and pectin and is able to grow on most simple sugars and carboxylic acids. Six different cellulases have been identified. Secreted cellulases have great biotechnological promise for utilization in the degradation of agricultural products and waste to produce sugars that can be subsequently converted to ethanol. Thermobifida fusca has a complete set of proteins comprising a sec system as well as the TAT system. Eight ABC disaccharide transporter cassettes were identified. A siderophore transport system, a siderophore biosynthesis cluster as well as a ferrous iron transport protein were identified. There are also four additional heavy metal transport systems. Thermobifida fusca is able to synthesize and metabolize saturated and unsaturated fatty acids, as well as phospholipids, glycolipids and isoprenoids. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyNocardiopsidaceae
GenusThermobifida
SpeciesThermobifida fusca
StrainYX

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Thermobifida fusca YX
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature50
Temperature rangeThermophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermobifida fusca YX

Accession NumberNC_007333.1

Gene Summary

Adenine Count

592034 bp

Thymine Count

591593 bp

Guanine Count

1230436 bp

Cytosine Count

1228186 bp

Genome Length

3642249 bp

Protein-coding Genes

3100 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaTFU_RS00005Q47U23+195 - 204267699.2
dna polymerase iii subunit betaTFU_RS00010Not Available+2800 - 394240596.3
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)TFU_RS00015G5EBD7+4002 - 488631749.8
dna replication/repair protein recfTFU_RS00020Q47U20+4988 - 612141785.8
duf721 domain-containing proteinTFU_RS00025Q82FD4+6111 - 663219106.7
dna topoisomerase (atp-hydrolyzing) subunit bTFU_RS00030P35886+6998 - 893571936.3
dna gyrase subunit aTFU_RS00035P35885+8992 - 1153894641.3
duf3566 domain-containing proteinTFU_RS00040P9WMA6+11738 - 1243023673.5
Trna-ileNot AvailableNot Available+12591 - 12664Not Available
acylneuraminate cytidylyltransferaseTFU_RS00050Q99KK2+13759 - 1491041357.1

Displaying genes 1 – 10 of 3165 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

342 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001789(3R)-citramalateC5H6O5Chemical structure of (3R)-citramalateNot available
Average146.099Da
Monoisotopic146.0226205Da
BASm0001790(3S)-citramalateC5H6O5Chemical structure of (3S)-citramalateNot available
Average146.099Da
Monoisotopic146.0226205Da
BASm0001795pentanoateC5H9O2Chemical structure of pentanoateNot available
Average101.126Da
Monoisotopic101.0608031Da
BASm0001842(5Z,8Z,11Z,14Z)-eicosatetraenoateC20H31O2Chemical structure of (5Z,8Z,11Z,14Z)-eicosatetraenoateNot available
Average303.467Da
Monoisotopic303.2329538Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 31–40 of 342 metabolites