Thermobifida fusca YX

Gram-positiveBacilliMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Thermobifida

Description

Thermobifida fusca, formerly known as Thermomonaspora fusca, is a moderate thermophilic soil bacterium (growth temperature 55 degrees Celsius) that is a major degrader of plant cell walls in heated organic materials such as compost heaps, rotting hay, manure piles or mushroom growth medium. It produces spores, which can be allergenic and causes the Farmer's lung disease (extrinsic allergic alveolitis). Its extracellular enzymes, including cellulases, have been studied because of their thermostability, broad pH range and high activity. It appears to degrade all major plant cell wall polymers except lignin and pectin and is able to grow on most simple sugars and carboxylic acids. Six different cellulases have been identified. Secreted cellulases have great biotechnological promise for utilization in the degradation of agricultural products and waste to produce sugars that can be subsequently converted to ethanol. Thermobifida fusca has a complete set of proteins comprising a sec system as well as the TAT system. Eight ABC disaccharide transporter cassettes were identified. A siderophore transport system, a siderophore biosynthesis cluster as well as a ferrous iron transport protein were identified. There are also four additional heavy metal transport systems. Thermobifida fusca is able to synthesize and metabolize saturated and unsaturated fatty acids, as well as phospholipids, glycolipids and isoprenoids. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyNocardiopsidaceae
GenusThermobifida
SpeciesThermobifida fusca
StrainYX

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Thermobifida fusca YX
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature50
Temperature rangeThermophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermobifida fusca YX

Accession NumberNC_007333.1

Gene Summary

Adenine Count

592034 bp

Thymine Count

591593 bp

Guanine Count

1230436 bp

Cytosine Count

1228186 bp

Genome Length

3642249 bp

Protein-coding Genes

3100 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaTFU_RS00005Q47U23+195 - 204267699.2
dna polymerase iii subunit betaTFU_RS00010Not Available+2800 - 394240596.3
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)TFU_RS00015G5EBD7+4002 - 488631749.8
dna replication/repair protein recfTFU_RS00020Q47U20+4988 - 612141785.8
duf721 domain-containing proteinTFU_RS00025Q82FD4+6111 - 663219106.7
dna topoisomerase (atp-hydrolyzing) subunit bTFU_RS00030P35886+6998 - 893571936.3
dna gyrase subunit aTFU_RS00035P35885+8992 - 1153894641.3
duf3566 domain-containing proteinTFU_RS00040P9WMA6+11738 - 1243023673.5
Trna-ileNot AvailableNot Available+12591 - 12664Not Available
acylneuraminate cytidylyltransferaseTFU_RS00050Q99KK2+13759 - 1491041357.1

Displaying genes 1 – 10 of 3165 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

342 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001345dibenzothiophene 5-oxideC12H8OSChemical structure of dibenzothiophene 5-oxideNot available
Average200.26Da
Monoisotopic200.0295861Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm00015534-hydroxy-6-methylpretetramideC20H15NO7Chemical structure of 4-hydroxy-6-methylpretetramideNot available
Average381.34Da
Monoisotopic381.0848518Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 21–30 of 342 metabolites