Thermobifida fusca YX

Gram-positiveBacilliMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Thermobifida

Description

Thermobifida fusca, formerly known as Thermomonaspora fusca, is a moderate thermophilic soil bacterium (growth temperature 55 degrees Celsius) that is a major degrader of plant cell walls in heated organic materials such as compost heaps, rotting hay, manure piles or mushroom growth medium. It produces spores, which can be allergenic and causes the Farmer's lung disease (extrinsic allergic alveolitis). Its extracellular enzymes, including cellulases, have been studied because of their thermostability, broad pH range and high activity. It appears to degrade all major plant cell wall polymers except lignin and pectin and is able to grow on most simple sugars and carboxylic acids. Six different cellulases have been identified. Secreted cellulases have great biotechnological promise for utilization in the degradation of agricultural products and waste to produce sugars that can be subsequently converted to ethanol. Thermobifida fusca has a complete set of proteins comprising a sec system as well as the TAT system. Eight ABC disaccharide transporter cassettes were identified. A siderophore transport system, a siderophore biosynthesis cluster as well as a ferrous iron transport protein were identified. There are also four additional heavy metal transport systems. Thermobifida fusca is able to synthesize and metabolize saturated and unsaturated fatty acids, as well as phospholipids, glycolipids and isoprenoids. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyNocardiopsidaceae
GenusThermobifida
SpeciesThermobifida fusca
StrainYX

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Thermobifida fusca YX
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature50
Temperature rangeThermophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermobifida fusca YX

Accession NumberNC_007333.1

Gene Summary

Adenine Count

592034 bp

Thymine Count

591593 bp

Guanine Count

1230436 bp

Cytosine Count

1228186 bp

Genome Length

3642249 bp

Protein-coding Genes

3100 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaTFU_RS00005Q47U23+195 - 204267699.2
dna polymerase iii subunit betaTFU_RS00010Not Available+2800 - 394240596.3
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)TFU_RS00015G5EBD7+4002 - 488631749.8
dna replication/repair protein recfTFU_RS00020Q47U20+4988 - 612141785.8
duf721 domain-containing proteinTFU_RS00025Q82FD4+6111 - 663219106.7
dna topoisomerase (atp-hydrolyzing) subunit bTFU_RS00030P35886+6998 - 893571936.3
dna gyrase subunit aTFU_RS00035P35885+8992 - 1153894641.3
duf3566 domain-containing proteinTFU_RS00040P9WMA6+11738 - 1243023673.5
Trna-ileNot AvailableNot Available+12591 - 12664Not Available
acylneuraminate cytidylyltransferaseTFU_RS00050Q99KK2+13759 - 1491041357.1

Displaying genes 1 – 10 of 3165 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

342 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da

Displaying 1–10 of 342 metabolites