Idiomarina loihiensis L2TR

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Idiomarina

Description

Idiomarina loihiensis is a gamma-proteobacterium isolated recently from a hydrothermal vent at 1300-m depth on the Loihi submarine volcano in Hawai. In contrast to obligate anaerobic vent hyperthermophiles, it inhabits partially oxygenated cold waters at the periphery of the vent and can survive a wide range of growth temperatures (from 4 degrees to 46 degrees Celsius) and salinities. I.loihiensis probably relies primarily on amino acid fermentation rather than on saccharolytic pathways for carbon and energy.(From http://www.expasy.org/sprot/hamap/IDILO.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusIdiomarina
SpeciesIdiomarina loihiensis
StrainL2TR

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Idiomarina loihiensis L2TR
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature4
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Idiomarina loihiensis L2TR

NC_006512.1

Gene Summary

Adenine Count

752994 bp

Thymine Count

750702 bp

Guanine Count

648501 bp

Cytosine Count

687121 bp

Genome Length

2839318 bp

Protein-coding Genes

2647 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaIL_RS00020Not Available+362 - 172651513.5
dna polymerase iii subunit betaIL_RS00025Not Available+1758 - 286140714.4
dna replication/repair protein recfIL_RS00030Not Available+2874 - 393840404.2
dna topoisomerase (atp-hydrolyzing) subunit bIL_RS00035Not Available+3954 - 637190680.5
glycine--trna ligase subunit betaIL_RS00040Not Available-6465 - 853176150.2
glycine--trna ligase subunit alphaIL_RS00045Not Available-8544 - 946435225.8
dna-3-methyladenine glycosylase iIL_RS00050Not Available+9558 - 1015722590.8
gnat family n-acetyltransferaseIL_RS00055Not Available+10174 - 1066518097.6
sulfurtransferase tusaIL_RS00060Not Available-10684 - 109239065.03
acetyl-coa c-acyltransferase fadaIL_RS00065Not Available-11193 - 1235641251.9

Displaying genes 1 – 10 of 2719 in total

Metabolites

1771 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1771 metabolites