Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

Gram-negativeSpirillaNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Leptospiria

Order

Leptospirales

Family

Leptospiraceae

Genus

Leptospira

Description

Leptospira interrogans causes leptospirosis whose manifestations are fever, headache, malaise, myalgia, occasionally meningitidis, sometimes jaundice, renal insufficiency, anemia and hemorrhage of the skin. Rarely lethal. Worldwide spread except in polar regions. Contamination occurs through contact of the skin or mucous membranes with contaminated water, soil or vegetation or through direct contact with urine or tissues of infected animals. Farm and pet animals, including cattle, dogs, horses and swine, rats and other rodents act as the normal carrier host; wild animals, including deer, squirrels, foxes, skunks and even reptiles and amphibians may be infected. (HAMAP: LEPIC)

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassLeptospiria
OrderLeptospirales
FamilyLeptospiraceae
GenusLeptospira
SpeciesLeptospira interrogans
StrainFiocruz L1-130

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130


Gene Summary

Adenine Count

1389947 bp

Thymine Count

1388105 bp

Guanine Count

747263 bp

Cytosine Count

751870 bp

Genome Length

4277185 bp

Protein-coding Genes

3430 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail collar domain proteinLIC_RS13320Not Available-3152985 - 315387531514.4
Tail collar domain proteinLIC_RS13325Not Available-3154020 - 315488930704.7
la_1064 family peroxide-responsive upregulated proteinLIC_RS13330Not Available-3154892 - 315516710778.1
Hypothetical proteinLIC_RS13335Not Available-3155164 - 315613836419.9
Baseplate proteinLIC_RS13340Not Available-3156135 - 315734943602.6
Hypothetical proteinLIC_RS13345Not Available-3157349 - 315769312948.6
gp138 family membrane-puncturing spike proteinLIC_RS13350Not Available-3157690 - 315837324306.2
Hypothetical proteinLIC_RS13355Not Available-3158370 - 315918830420.6
phage baseplate plug proteinLIC_RS13360Not Available-3159185 - 315952313256.8
phage baseplate proteinLIC_RS13365Not Available-3159541 - 316015222286.8

Displaying genes 1 – 10 of 3772 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

555 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da

Displaying 1–10 of 555 metabolites