Bdellovibrio bacteriovorus HD100

Gram-negativeCurvedShapedNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bdellovibrionota

Class

Bdellovibrionia

Order

Bdellovibrionales

Family

Pseudobdellovibrionaceae

Genus

Bdellovibrio

Description

Bdellovibrio bacteriovorus is a tiny and highly motile delta-proteobacterium that preys on other Gram-negative bacteria. Bdellovibrio bacteriovorus attaches itself to the cell wall of its prey and invades the cell where it goes through a full-life cycle. After it reproduces, the offspring burst out of the cell. Despite its small size, it has a relatively large genome encoding more than 3500 proteins. (HAMAP: BDEBA)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Bdellovibrionota
Class	Bdellovibrionia
Order	Bdellovibrionales
Family	Pseudobdellovibrionaceae
Genus	Bdellovibrio
Species	Bdellovibrio bacteriovorus
Strain	HD100

Profile

Physiology
Gram staining properties	Negative
Shape	CurvedShaped
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	28
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	No

Genome Summary

Bdellovibrio bacteriovorus HD100

Accession NumberNC_005363.1

Gene Summary

Adenine Count

932069 bp

Thymine Count

934987 bp

Guanine Count

959802 bp

Cytosine Count

956092 bp

Genome Length

3782950 bp

Protein-coding Genes

3555 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
hypothetical protein	BD_RS03445	Not Available	-	712175 - 713203	37852.9
hypothetical protein	BD_RS03450	Not Available	-	713234 - 713824	22084.4
hypothetical protein	BD_RS03455	Not Available	-	713824 - 716520	100828.0
hypothetical protein	BD_RS03460	Not Available	-	716548 - 717081	19422.6
aminopeptidase	BD_RS03465	Not Available	-	717439 - 718488	40462.4
outer membrane beta-barrel protein	BD_RS03470	Not Available	-	718485 - 719057	20795.8
peptide-methionine (r)-s-oxide reductase msrb	BD_RS03475	Not Available	+	719145 - 719561	15260.9
duf3750 domain-containing protein	BD_RS03480	Not Available	+	719624 - 720343	26583.0
energy transducer tonb	BD_RS03485	Not Available	-	720340 - 721227	33994.7
pilz domain-containing protein	BD_RS03490	Not Available	+	721320 - 721829	18664.3

Displaying genes 691 – 700 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da
BASm0001691	hydrogenselenideHSe		Not available	Average79.98Da Monoisotopic80.924896Da
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002157	7-cyano-7-deazaguanineC7H5N5O		Not available	Average175.1475Da Monoisotopic175.0494098Da
BASm0002710	7,8-dihydrofolateC19H19N7O6		Not available	Average441.405Da Monoisotopic441.1407785Da

Displaying 1–10 of 40 metabolites