Bdellovibrio bacteriovorus HD100

Gram-negativeCurvedShapedNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bdellovibrionota

Class

Bdellovibrionia

Order

Bdellovibrionales

Family

Pseudobdellovibrionaceae

Genus

Bdellovibrio

Description

Bdellovibrio bacteriovorus is a tiny and highly motile delta-proteobacterium that preys on other Gram-negative bacteria. Bdellovibrio bacteriovorus attaches itself to the cell wall of its prey and invades the cell where it goes through a full-life cycle. After it reproduces, the offspring burst out of the cell. Despite its small size, it has a relatively large genome encoding more than 3500 proteins. (HAMAP: BDEBA)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Bdellovibrionota
Class	Bdellovibrionia
Order	Bdellovibrionales
Family	Pseudobdellovibrionaceae
Genus	Bdellovibrio
Species	Bdellovibrio bacteriovorus
Strain	HD100

Profile

Physiology
Gram staining properties	Negative
Shape	CurvedShaped
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	28
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	No

Genome Summary

Bdellovibrio bacteriovorus HD100

Accession NumberNC_005363.1

Gene Summary

Adenine Count

932069 bp

Thymine Count

934987 bp

Guanine Count

959802 bp

Cytosine Count

956092 bp

Genome Length

3782950 bp

Protein-coding Genes

3555 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
quinolinate synthase nada	BD_RS17075	Not Available	+	3610677 - 3611642	35916.4
4'-phosphopantetheinyl transferase superfamily protein	BD_RS17080	Not Available	+	3611650 - 3612186	19529.1
hypothetical protein	BD_RS17085	Not Available	+	3612257 - 3612649	14690.8
hypothetical protein	BD_RS17090	Not Available	+	3612768 - 3613517	27543.9
hypothetical protein	BD_RS17095	Not Available	+	3613635 - 3614123	17479.0
hypothetical protein	BD_RS17100	Not Available	-	3614198 - 3614833	23882.6
l,d-transpeptidase	BD_RS17105	Not Available	-	3614953 - 3615693	27832.3
Trna-val	Not Available	Not Available	+	3615924 - 3615999	Not Available
hypothetical protein	BD_RS17115	Not Available	-	3616067 - 3616636	21186.9
helix-turn-helix domain-containing protein	BD_RS17120	Not Available	-	3616646 - 3617749	42855.5

Displaying genes 3431 – 3440 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da
BASm0001691	hydrogenselenideHSe		Not available	Average79.98Da Monoisotopic80.924896Da
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002157	7-cyano-7-deazaguanineC7H5N5O		Not available	Average175.1475Da Monoisotopic175.0494098Da
BASm0002710	7,8-dihydrofolateC19H19N7O6		Not available	Average441.405Da Monoisotopic441.1407785Da

Displaying 1–10 of 40 metabolites