Bdellovibrio bacteriovorus HD100

Gram-negativeCurvedShapedNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bdellovibrionota

Class

Bdellovibrionia

Order

Bdellovibrionales

Family

Pseudobdellovibrionaceae

Genus

Bdellovibrio

Description

Bdellovibrio bacteriovorus is a tiny and highly motile delta-proteobacterium that preys on other Gram-negative bacteria. Bdellovibrio bacteriovorus attaches itself to the cell wall of its prey and invades the cell where it goes through a full-life cycle. After it reproduces, the offspring burst out of the cell. Despite its small size, it has a relatively large genome encoding more than 3500 proteins. (HAMAP: BDEBA)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Bdellovibrionota
Class	Bdellovibrionia
Order	Bdellovibrionales
Family	Pseudobdellovibrionaceae
Genus	Bdellovibrio
Species	Bdellovibrio bacteriovorus
Strain	HD100

Profile

Physiology
Gram staining properties	Negative
Shape	CurvedShaped
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	28
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	No

Genome Summary

Bdellovibrio bacteriovorus HD100

Accession NumberNC_005363.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3555 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
giy-yig nuclease family protein	BD_RS18510	Not Available	-	3571185 - 3571430	9307.43
hypothetical protein	BD_RS16890	Not Available	-	3571791 - 3572780	38215.7
m48 family metallopeptidase	BD_RS18005	Not Available	-	3572755 - 3573462	27271.2
type i restriction endonuclease subunit r	BD_RS16900	Not Available	-	3573462 - 3576689	124415.0
restriction endonuclease subunit s	BD_RS16905	Not Available	-	3576704 - 3577957	46068.1
type i restriction-modification system subunit m	BD_RS16910	Not Available	-	3577950 - 3579707	67065.8
sir2 family nad-dependent protein deacylase	BD_RS16915	Not Available	-	3579704 - 3580798	42373.4
helix-turn-helix domain-containing protein	BD_RS16920	Not Available	-	3580791 - 3580973	6863.25
Tmrna,resume consensus sequence (at 84): tgtaattggcaacgatta	Not Available	Not Available	+	3581278 - 3581623	Not Available
duf4423 domain-containing protein	BD_RS16925	Not Available	-	3581957 - 3583099	42609.4

Displaying genes 3391 – 3400 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da
BASm0001691	hydrogenselenideHSe		Not available	Average79.98Da Monoisotopic80.924896Da
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002157	7-cyano-7-deazaguanineC7H5N5O		Not available	Average175.1475Da Monoisotopic175.0494098Da
BASm0002710	7,8-dihydrofolateC19H19N7O6		Not available	Average441.405Da Monoisotopic441.1407785Da

Displaying 1–10 of 40 metabolites