Bdellovibrio bacteriovorus HD100

Gram-negativeCurvedShapedNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bdellovibrionota

Class

Bdellovibrionia

Order

Bdellovibrionales

Family

Pseudobdellovibrionaceae

Genus

Bdellovibrio

Description

Bdellovibrio bacteriovorus is a tiny and highly motile delta-proteobacterium that preys on other Gram-negative bacteria. Bdellovibrio bacteriovorus attaches itself to the cell wall of its prey and invades the cell where it goes through a full-life cycle. After it reproduces, the offspring burst out of the cell. Despite its small size, it has a relatively large genome encoding more than 3500 proteins. (HAMAP: BDEBA)

Taxonomy

KingdomPseudomonadati
PhylumBdellovibrionota
ClassBdellovibrionia
OrderBdellovibrionales
FamilyPseudobdellovibrionaceae
GenusBdellovibrio
SpeciesBdellovibrio bacteriovorus
StrainHD100

Profile

Physiology
Gram staining propertiesNegative
ShapeCurvedShaped
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Bdellovibrio bacteriovorus HD100

Accession NumberNC_005363.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3555 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
superoxide dismutaseBD_RS16540Not Available+3513569 - 351418923078.3
hypothetical proteinBD_RS16545Not Available-3514347 - 351512029207.7
flavodoxin family proteinBD_RS16550Not Available-3515244 - 351581320810.5
bon domain-containing proteinBD_RS16555Not Available-3515974 - 351653121045.5
hpf/raia family ribosome-associated proteinBD_RS16560Not Available-3516571 - 351694814435.4
lysr family transcriptional regulatorBD_RS16565Not Available+3517155 - 351807534824.3
m20/m25/m40 family metallo-hydrolaseBD_RS16570Not Available-3518127 - 351936245308.1
b12-binding domain-containing radical sam proteinBD_RS16575Not Available+3519472 - 352104360645.8
duf1772 domain-containing proteinBD_RS16580Not Available-3520994 - 352150319117.9
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigBD_RS16585Not Available-3521555 - 352232229253.1

Displaying genes 3321 – 3330 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

40 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da

Displaying 1–10 of 40 metabolites