Bdellovibrio bacteriovorus HD100

Gram-negativeCurvedShapedNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bdellovibrionota

Class

Bdellovibrionia

Order

Bdellovibrionales

Family

Pseudobdellovibrionaceae

Genus

Bdellovibrio

Description

Bdellovibrio bacteriovorus is a tiny and highly motile delta-proteobacterium that preys on other Gram-negative bacteria. Bdellovibrio bacteriovorus attaches itself to the cell wall of its prey and invades the cell where it goes through a full-life cycle. After it reproduces, the offspring burst out of the cell. Despite its small size, it has a relatively large genome encoding more than 3500 proteins. (HAMAP: BDEBA)

Taxonomy

KingdomPseudomonadati
PhylumBdellovibrionota
ClassBdellovibrionia
OrderBdellovibrionales
FamilyPseudobdellovibrionaceae
GenusBdellovibrio
SpeciesBdellovibrio bacteriovorus
StrainHD100

Profile

Physiology
Gram staining propertiesNegative
ShapeCurvedShaped
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Bdellovibrio bacteriovorus HD100

Accession NumberNC_005363.1

Gene Summary

Adenine Count

932069 bp

Thymine Count

934987 bp

Guanine Count

959802 bp

Cytosine Count

956092 bp

Genome Length

3782950 bp

Protein-coding Genes

3555 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
30s ribosomal protein s3BD_RS13595Not Available-2869658 - 287032324721.2
50s ribosomal protein l22BD_RS13600Not Available-2870326 - 287065812315.3
30s ribosomal protein s19BD_RS13605Not Available-2870671 - 287095810651.0
50s ribosomal protein l2BD_RS13610Not Available-2870968 - 287178629450.9
50s ribosomal protein l23BD_RS13615Not Available-2871789 - 287206710308.6
50s ribosomal protein l4BD_RS13620Not Available-2872067 - 287269622807.0
50s ribosomal protein l3BD_RS13625Not Available-2872698 - 287336023649.3
30s ribosomal protein s10BD_RS13630Not Available-2873370 - 287368712059.8
elongation factor gBD_RS13635Not Available-2873895 - 287600077094.8
30s ribosomal protein s7BD_RS13640Not Available-2876010 - 287648318217.3

Displaying genes 2731 – 2740 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

40 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da

Displaying 1–10 of 40 metabolites