Wolinella succinogenes DSM 1740

Gram-negativeSpirillaMotileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Wolinella

Description

W. succinogenes is a nonfermenting bacterium that grows anaerobic respiration and has been reported to grow in the presence of 2% oxygen). The darting motility of W. succinogenes has triggered several projects that investigated the unique aspects of its monotrichous flagellation and the insertion of the flagellar motor into the pole of the cell. W. succinogenes has been isolated from the bovine rumen, the human gingival sulcus, and dental root canal infections.To understand the origin and emergence of pathogenic bacteria, comparison to their nonpathogenic relatives is a necessary. Therefore, the 2.11-megabase genome sequence of Wolinella succinogenes, which is closely related to the pathogenic bacteria Helicobacter pylori and Campylobacter jejuni, has been sequenced. Despite being considered nonpathogenic to its bovine host, W. succinogenes holds an extensive repertoire of genes homologous to known bacterial virulence factors. Many of these genes have been acquired by lateral gene transfer.In contrast to other host-adapted bacteria, W. succinogenes does contain the highest density of bacterial sensor kinases found in any bacterial genome to date, together with an elaborate signalling circuitry of the GGDEF family of proteins. Because the analysis of the W. succinogenes genome also revealed genes related to soil and plant associated bacteria such as the nif genes, W. succinogenes may represent a member of the epsilon proteobacteria with a life cycle outside its host.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusWolinella
SpeciesWolinella succinogenes
StrainDSM 1740

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Cow
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Wolinella succinogenes DSM 1740


Gene Summary

Adenine Count

541903 bp

Thymine Count

545816 bp

Guanine Count

517215 bp

Cytosine Count

505421 bp

Genome Length

2110355 bp

Protein-coding Genes

2073 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaWS_RS00005Not Available+1 - 131450103.4
dna polymerase iii subunit betaWS_RS00010Not Available+1474 - 254140673.2
dna topoisomerase (atp-hydrolyzing) subunit bWS_RS00015Not Available+2561 - 487987323.8
preq(1) synthaseWS_RS00020Not Available+4890 - 526414736.6
glycerol-3-phosphate 1-o-acyltransferase plsyWS_RS00025Not Available+5274 - 590022366.4
dihydroneopterin aldolaseWS_RS00030Not Available+5897 - 622012200.9
bcct family transporterWS_RS00035Not Available-6224 - 817972858.9
universal stress proteinWS_RS00040Not Available-8279 - 913632218.4
hypothetical proteinWS_RS00045Not Available-9299 - 979017708.2
c-type cytochromeWS_RS00050Not Available-9802 - 1091740830.3

Displaying genes 1 – 10 of 2125 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1676 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1676 metabolites