Streptococcus agalactiae NEM316

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Streptococcaceae

Genus

Streptococcus

Description

Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusStreptococcus
SpeciesStreptococcus agalactiae
StrainNEM316

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Streptococcus agalactiae NEM316
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementChains - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Streptococcus agalactiae NEM316


Gene Summary

Adenine Count

713263 bp

Thymine Count

710327 bp

Guanine Count

393568 bp

Cytosine Count

394327 bp

Genome Length

2211485 bp

Protein-coding Genes

2131 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sp_0009 family proteinGBS_RS00055Not Available+10743 - 108775326.26
serine hydrolaseGBS_RS00060Not Available+10877 - 1216348593.7
trna lysidine(34) synthetase tilsGBS_RS00065Not Available+12165 - 1343949936.1
hypoxanthine phosphoribosyltransferaseGBS_RS00070Not Available+13444 - 1398620384.5
atp-dependent zinc metalloprotease ftshGBS_RS00075Not Available+14009 - 1598571683.9
16s ribosomal rnaNot AvailableNot Available+16476 - 18024Not Available
Trna-alaNot AvailableNot Available+18079 - 18151Not Available
23s ribosomal rnaNot AvailableNot Available+18306 - 21208Not Available
5s ribosomal rnaNot AvailableNot Available+21283 - 21398Not Available
Trna-valNot AvailableNot Available+21402 - 21474Not Available

Displaying genes 11 – 20 of 2235 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 248 metabolites