Rhizobium etli CFN 42

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium etli, a soil-dwelling, symbiotic nitrogen-fixing bacterium, is the main nodulator of Phaseolus vulgaris, the common bean. It contains one chromosome and 6 large plasmids, which contribute approximately one third of the genome. This strain is of considerable agronomic importance. (HAMAP: RHIEC)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium etli
StrainCFN42

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium etli CFN 42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Phaseolus vulgaris
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Rhizobium etli CFN 42

NC_007762.1NC_004041.2NC_007766.1

Gene Summary

Adenine Count

40943 bp

Thymine Count

40628 bp

Guanine Count

56305 bp

Cytosine Count

56353 bp

Genome Length

194229 bp

Protein-coding Genes

204 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
cytochrome c oxidase subunit 3RHE_RS29110Not Available+579324 - 57986319455.1
cytochrome c oxidase subunit iv family proteinRHE_RS29115Not Available+579860 - 58015310041.9
c-type cytochromeRHE_RS29120Not Available+580253 - 58070516840.7
cbb3-type cytochrome c oxidase subunit iRHE_RS29125Not Available+580726 - 58206650515.0
cbbq/nirq/norq/gpvn family proteinRHE_RS29130Not Available+582096 - 58291129499.8
nitric oxide reductase activation protein nordRHE_RS29135Not Available+582915 - 58480171016.0
oxygen-independent coproporphyrinogen iii oxidaseRHE_RS29140Not Available-584941 - 58629348803.1
duf2249 domain-containing proteinRHE_RS29145Not Available+586510 - 58679410596.4
hypothetical proteinRHE_RS29150Not Available+586810 - 58816246764.7
duf2249 domain-containing proteinRHE_RS29155Not Available+588168 - 58869820027.0

Displaying genes 1121 – 1130 of 1185 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1702 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1702 metabolites