Methylococcus capsulatus str. Bath

Gram-negativeCocciNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Methylococcales

Family

Methylococcaceae

Genus

Methylococcus

Description

Obligate, Gram-negative methanotroph. Methanotrophs are responsible for the oxidation of biologically generated methane and therefore help reduce the amount of this greenhouse gas that is released to Earth's atmosphere. The conversion of methane to biomass by M. capsulatus has been exploited for large-scale commercial production of microbial proteins by fermentation.(From http://www.expasy.org/sprot/hamap/METCA.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderMethylococcales
FamilyMethylococcaceae
GenusMethylococcus
SpeciesMethylococcus capsulatus
StrainBath

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Methylococcus capsulatus str. Bath
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature45
Temperature rangeThermophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceMethanotroph
PathogenicityNo

Genome Summary

Methylococcus capsulatus str. Bath

Accession NumberNC_002977.6

Gene Summary

Adenine Count

602607 bp

Thymine Count

600762 bp

Guanine Count

1047576 bp

Cytosine Count

1053615 bp

Genome Length

3304561 bp

Protein-coding Genes

2962 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
thioredoxin trxcMCA_RS10440Not Available+2298409 - 229882815278.5
ammonium transporterMCA_RS10445Not Available-2299172 - 230061449878.0
p-ii family nitrogen regulatorMCA_RS10450Not Available-2300645 - 230098312191.8
accessory factor ubik family proteinMCA_RS10455Not Available+2301244 - 23014959431.36
yifb family mg chelatase-like aaa atpaseMCA_RS10460Not Available+2301504 - 230302154219.4
dna helicase repMCA_RS10465Not Available+2303018 - 230502176529.2
Trna-argNot AvailableNot Available+2305048 - 2305124Not Available
Trna-proNot AvailableNot Available+2305182 - 2305258Not Available
dna repair protein radcMCA_RS15745Not Available+2305501 - 23057469457.17
hypothetical proteinMCA_RS10485Not Available-2306060 - 23063208961.89

Displaying genes 2231 – 2240 of 3095 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

171 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 171 metabolites