Escherichia coli strain SJRP/Ec42664 Cotig_57

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SJRP/Ec42664 Cotig_57 is a Gram-negative rod-shaped bacterium that typically exists in pairs or singles and is categorized as a facultative anaerobe, thriving optimally at 37.0°C. This strain, like other members of the genus Escherichia, is primarily host-associated, indicating its presence in the gastrointestinal tract of various hosts, where it may play a role in nutrient absorption and microbiome dynamics. The rod shape and arrangement of the cells facilitate motility and interaction with the host environment, which is crucial for its survival and potential symbiotic functions. As a facultative anaerobe, this strain can adapt to varying oxygen levels, allowing it to thrive in both aerobic and anaerobic conditions commonly found within the host's gut. Understanding the specific habitat preferences and physiological traits of Escherichia coli strain SJRP/Ec42664 Cotig_57 is essential for exploring its interactions within the host microbiome. These interactions may provide insights into its potential roles in metabolic processes or nutrient cycling in host-associated environments, contributing to our broader understanding of microbial ecology and the maintenance of gut health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SJRP/Ec42664 Cotig_57

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SJRP/Ec42664 Cotig_57
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SJRP/Ec42664 Cotig_57


Gene Summary

Adenine Count

1332125 bp

Thymine Count

1338882 bp

Guanine Count

1364194 bp

Cytosine Count

1387816 bp

Genome Length

5423017 bp

Protein-coding Genes

5132 genes

Non-Coding Genes

378 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative transcriptional repressor dicaBZL31_06295Not Available+1225658 - 122597812262.5
hypothetical proteinBZL31_06300Not Available+1226064 - 12262225775.69
hypothetical proteinBZL31_06305Not Available+1226206 - 122650511215.7
hypotheticalBZL31_06310Not Available-1226559 - 12267326595.1
Regulatory protein rhaBZL31_06315Not Available+1227223 - 122757912756.5
Regulatory protein rhaBZL31_06320Not Available+1227639 - 122849031226.7
Host killing proteinBZL31_06325Not Available+1228536 - 12287578394.12
Exodeoxyribonuclease viiiBZL31_06330Not Available+1228877 - 123133090453.4
Hypothetical proteinBZL31_06335Not Available+1231389 - 12315927692.35
Integrase proteinBZL31_06340Not Available+1231592 - 123261739214.0

Displaying genes 1 – 10 of 5510 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites