Rodentibacter mrazii strain Ppn418

microaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter mrazii strain Ppn418 is a Gram-negative bacterium classified under the genus Rodentibacter, characterized by its microaerophilic oxygen requirement. This strain exhibits a specific adaptation to environments with reduced oxygen concentrations, suggesting a potential ecological niche in habitats where oxygen levels are limited but not absent. As a microaerophile, R. mrazii strain Ppn418 likely thrives in environments such as the gastrointestinal tracts of rodents or other mammals, where oxygen levels are lower than atmospheric conditions but higher than anaerobic environments. The Gram-negative nature of this bacterium implies the presence of a complex outer membrane, which may contribute to its resilience and adaptability in fluctuating environmental conditions. Understanding the growth characteristics and environmental preferences of Rodentibacter mrazii strain Ppn418 can provide insights into its role in microbial communities, particularly within its host organisms. This strain could serve as a model for studying the interactions between microaerophilic bacteria and their hosts, highlighting the importance of oxygen gradients in microbial ecology. Further investigation into its metabolic pathways and interactions with other microbial species could reveal its contributions to the gut microbiome's overall functionality and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter mrazii
Strainstrain Ppn418

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter mrazii strain Ppn418


Gene Summary

Adenine Count

742047 bp

Thymine Count

749957 bp

Guanine Count

496452 bp

Cytosine Count

496249 bp

Genome Length

2484705 bp

Protein-coding Genes

2253 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
branched-chain amino acid abc transporter permeaseBKK47_00160Not Available-32291 - 3298025554.8
abc transporter substrate-binding proteinBKK47_00165Not Available-33358 - 3421531300.3
glutamine abc transporter atp-binding proteinBKK47_00170Not Available-34199 - 3496328429.8
amino acid abc transporter permeaseBKK47_00175Not Available-34974 - 3564225164.5
amino acid abc transporterBKK47_00180Not Available-35632 - 3629124363.6
hypothetical proteinBKK47_00185Not Available+37164 - 3748411885.5
Trna-valNot AvailableNot Available+37704 - 37780Not Available
pyruvate kinaseBKK47_00195Not Available+38005 - 3944151472.4
replicative dna helicaseBKK47_00200Not Available+39693 - 4109952249.3
alanine racemaseBKK47_00205Not Available+41109 - 4219139686.1

Displaying genes 71 – 80 of 2341 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites