Rodentibacter caecimuris strain 2002178011

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter caecimuris strain 2002178011 is a Gram-negative, rod-shaped bacterium. This strain exemplifies the morphological characteristics typical of the Rodentibacter genus, which is notable for its association with rodent hosts. The Gram-negative classification indicates that this bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and potential hosts. The rod shape of Rodentibacter caecimuris strain 2002178011 facilitates motility and colonization, allowing it to adapt to various ecological niches within the gastrointestinal tracts of rodents. While specific metabolic capabilities and ecological roles of this strain have not been detailed, the presence of such bacteria in rodent microbiomes can be significant for nutrient cycling and host digestion, potentially aiding in the breakdown of complex substrates. The identification of this strain contributes to the understanding of microbial diversity associated with rodent species and highlights the ecological importance of gastrointestinal microbiota in maintaining host health and ecosystem balance. Further studies could elucidate the specific interactions between Rodentibacter caecimuris strain 2002178011 and its rodent hosts, shedding light on the broader implications for rodent biology and the microbial ecology of their habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter caecimuris
Strainstrain 2002178011

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter caecimuris strain 2002178011


Gene Summary

Adenine Count

745079 bp

Thymine Count

746541 bp

Guanine Count

502320 bp

Cytosine Count

499371 bp

Genome Length

2493311 bp

Protein-coding Genes

2156 genes

Non-Coding Genes

163 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative tail fiber assembly proteinBKG99_00755Not Available-153563 - 15396315468.4
AttlNot AvailableNot Available+153564 - 153575Not Available
Tail fiber proteinBKG99_00760Not Available-155130 - 15575322556.5
Tail formation protein iBKG99_00765Not Available-155756 - 15629520037.2
Baseplate assembly proteinBKG99_00770Not Available-156285 - 15719933668.2
Baseplate assembly protein wBKG99_00775Not Available-157196 - 15753412891.8
Baseplate assembly protein vBKG99_00780Not Available-157531 - 15812120981.6
Type ii toxin-antitoxin system rele/pare family toxinBKG99_00785Not Available-158259 - 15854310762.0
Hypothetical proteinBKG99_00790Not Available-158536 - 1587156776.09
Tail tape measure proteinBKG99_00795Not Available-158798 - 161695104675.0

Displaying genes 1 – 10 of 2319 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites