Vibrio parahaemolyticus strain 04-2548_100

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio parahaemolyticus strain 04-2548_100 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is categorized as a facultative anaerobe. This strain does not undergo sporulation and is known to be a heterotroph, deriving its energy from organic compounds. It thrives in aquatic habitats, indicative of its ecological niche, where it likely plays a role in nutrient cycling and the decomposition of organic matter. The optimal growth temperature for strain 04-2548_100 is around 20.0°C, suggesting a preference for temperate aquatic environments. This characteristic aligns with the general ecological adaptations of many Vibrio species, which are commonly found in coastal and estuarine waters, particularly in regions where organic material is abundant. Given its traits, this strain may contribute to the microbial diversity within its habitat and participate in the dynamics of aquatic ecosystems, potentially influencing both microbial community structure and biogeochemical processes. Further studies could elucidate its specific interactions within the microbiome of aquatic systems, highlighting its ecological significance in nutrient cycling and organic matter degradation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio parahaemolyticus
Strainstrain 04-2548_100

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Vibrio parahaemolyticus strain 04-2548_100
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio parahaemolyticus strain 04-2548_100


Gene Summary

Adenine Count

1498374 bp

Thymine Count

1502912 bp

Guanine Count

1237773 bp

Cytosine Count

1225282 bp

Genome Length

5464342 bp

Protein-coding Genes

3657 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
translation elongation factor gBA740_16390Not Available-371 - 247077634.4
30s ribosomal protein s7BA740_16395Not Available-2609 - 307917760.7
30s ribosomal protein s12BA740_16400Not Available-3181 - 355513709.8
trna 2-thiouridine(34) synthase tusbBA740_16405Not Available-3734 - 400910003.9
trna 2-thiouridine(34) synthase tuscBA740_16410Not Available-4017 - 437312845.4
trna 2-thiouridine(34) synthase tusdBA740_16415Not Available-4370 - 476514053.5
hypothetical proteinBA740_16420Not Available-4768 - 548426623.8
fkbp-type peptidyl-prolyl cis-trans isomerase fkpaBA740_16425Not Available-5628 - 641028269.3
hypothetical proteinBA740_16430Not Available+6539 - 752536534.0
slyx proteinBA740_16435Not Available+7522 - 77498652.24

Displaying genes 1 – 10 of 3657 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites