Aliivibrio fischeri strain 5F97

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Aliivibrio fischeri strain 5F97 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. A. fischeri strain 5F97 exhibits heterotrophic metabolism, utilizing organic compounds as its energy source, which reflects its adaptability to diverse habitats. The optimal growth temperature for A. fischeri strain 5F97 is around 20.0°C, suggesting a preference for cooler environments, potentially aligning with its natural habitats in marine ecosystems. The strain's ability to grow under varying oxygen conditions may contribute to its ecological versatility, allowing it to occupy various niches within its habitat. One interesting aspect of A. fischeri species, including strain 5F97, is their potential role in symbiotic relationships, particularly in marine organisms. While specific interactions of this strain have not been detailed, the genus Aliivibrio is known for its associations with bioluminescent marine species, which may hint at a broader ecological significance. The adaptability of strain 5F97 to multiple habitats alongside its metabolic flexibility underscores its potential contribution to nutrient cycling in aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusAliivibrio
SpeciesAliivibrio fischeri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aliivibrio fischeri strain 5F97
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNon-pathogenic

Genome Summary

Aliivibrio fischeri strain 5F97

Accession NumberMAJN00000000.1

Gene Summary

Adenine Count

1345339 bp

Thymine Count

1330129 bp

Guanine Count

802797 bp

Cytosine Count

862748 bp

Genome Length

4343102 bp

Protein-coding Genes

3800 genes

Non-Coding Genes

209 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
aminopeptidaseA6E13_06030Not Available-3169592 - 316988210911.9
atp-dependent dna helicase recqA6E13_06035Not Available-3169886 - 317172168922.3
chloramphenical resistance permease rardA6E13_06040Not Available+3171948 - 317285333317.7
dna helicase iiA6E13_06045Not Available-3173272 - 317547383207.8
adenylate cyclaseA6E13_06050Not Available-3175558 - 317808397244.3
hydroxymethylbilane synthaseA6E13_06055Not Available+3178341 - 317927633738.8
uroporphyrinogen iii synthaseA6E13_06060Not Available+3179279 - 318004028539.9
heme biosynthesis operon protein hemxA6E13_06065Not Available+3180037 - 318123044382.1
heme biosynthesis protein hemyA6E13_06070Not Available+3181227 - 318241144610.8
nad(p)h-flavin reductaseA6E13_06075Not Available-3182491 - 318320126084.1

Displaying genes 2981 – 2990 of 4009 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0015880N-(3-oxodecanoyl)-L-homoserine lactoneC14H23NO4Chemical structure of N-(3-oxodecanoyl)-L-homoserine lactoneNULL
Average269.341Da
Monoisotopic269.162708225Da
BASm00172855-MethylthioriboseC6H12O4SChemical structure of 5-Methylthioribose23656-67-9
Average180.222Da
Monoisotopic180.045629562Da
BASm00189185'-DeoxyriboseC5H10O4Chemical structure of 5'-DeoxyriboseNULL
Average134.1305Da
Monoisotopic134.057908808Da
BASm0034737(6S)-5,6,7,8-tetrahydrofolic acidC19H23N7O6Chemical structure of (6S)-5,6,7,8-tetrahydrofolic acidNULL
Average445.4292Da
Monoisotopic445.170981503Da

Displaying 1–6 of 6 metabolites