Pseudomonas putida strain CBF10-2

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain CBF10-2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is nonsporulating and relies on heterotrophic processes for energy, utilizing organic compounds found in its habitat. P. putida strain CBF10-2 is predominantly found in soil and wastewater environments, where it plays a significant role in the biodegradation of organic pollutants. Its metabolic versatility enables it to adapt to varying nutrient availability and oxygen levels, which is particularly advantageous in dynamic ecosystems such as polluted sites or wastewater treatment facilities. The ability of Pseudomonas putida to effectively utilize diverse carbon sources enhances its potential for bioremediation applications, particularly in the detoxification of contaminated environments. Additionally, this strain's adaptation to wastewater habitats may contribute to the microbial diversity and resilience of microbial communities in these environments, underscoring its ecological significance. Thus, P. putida strain CBF10-2 exemplifies the important roles that microorganisms play in nutrient cycling and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain CBF10-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain CBF10-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain CBF10-2


Gene Summary

Adenine Count

1110653 bp

Thymine Count

1109953 bp

Guanine Count

1949423 bp

Cytosine Count

1950596 bp

Genome Length

6120625 bp

Protein-coding Genes

5202 genes

Non-Coding Genes

189 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinAYO28_13940Not Available+1926007 - 192712541747.0
recombinase recxAYO28_13945B0KT21-1927132 - 192759917982.4
Dna strand exchange and recombination protein with protease and nuclease activityAYO28_13950Q07447-1927608 - 192867537814.5
damage-inducible protein cinaAYO28_13955P72227-1928780 - 192926216779.8
LysozymeAYO28_13960Not Available-1929301 - 192979818289.8
LysozymeAYO28_13965Not Available-1929795 - 193034620682.7
Hypothetical proteinAYO28_13970Not Available-1930343 - 193139838845.9
phage tail proteinAYO28_13975Not Available-1931457 - 19316637305.72
Putative tail proteinAYO28_13980Not Available-1931638 - 193248329851.6
hypothetical proteinAYO28_13985Not Available-1932493 - 193473677015.2

Displaying genes 1 – 10 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

348 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 348 metabolites