Micrococcus luteus strain NDB3Y10

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Micrococcus

Description

Micrococcus luteus strain NDB3Y10 is a Gram-positive coccus that typically exhibits a tetrad arrangement. This strain is classified as an aerobic organism, requiring oxygen for growth and metabolism. Micrococcus luteus species are known to thrive in various habitats, suggesting a degree of environmental versatility. As a member of the Micrococcaceae family, M. luteus is characterized by its spherical shape and the formation of tetrads, which may influence its ecological interactions and colonization patterns. The presence of this strain in diverse environments indicates its adaptability and potential role in nutrient cycling and microbial communities. The ability of M. luteus strain NDB3Y10 to exist in multiple habitats as an aerobe may provide insights into its ecological significance, particularly in aerobic environments where it can contribute to the breakdown of organic matter and support other microbial life. This trait suggests that M. luteus could play a role in maintaining the balance of microbial ecosystems, particularly in soil or water where oxygen is readily available. Further investigation into the metabolic capabilities and interactions of this strain within its habitats could enhance our understanding of its ecological functions and contributions to microbial diversity.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusMicrococcus
SpeciesMicrococcus luteus
Strainstrain NDB3Y10

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Micrococcus luteus strain NDB3Y10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementTetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Micrococcus luteus strain NDB3Y10


Gene Summary

Adenine Count

337845 bp

Thymine Count

337284 bp

Guanine Count

910905 bp

Cytosine Count

911478 bp

Genome Length

2497512 bp

Protein-coding Genes

2274 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+33 - 142Not Available
insertion element uncharacterized 12.0 kda proteinAU359_00001Not Available+53 - 37012022.1
23s ribosomal rnaNot AvailableNot Available+340 - 3424Not Available
hypothetical proteinAU359_00002Not Available-2515 - 351037284.8
16s ribosomal rnaNot AvailableNot Available+3865 - 5385Not Available
50s ribosomal protein l27AU359_00003C5CAZ4-3722 - 39799096.77
50s ribosomal protein l21AU359_00004C5CAZ3-4031 - 433610680.1
hypothetical proteinAU359_00005Not Available-4569 - 47425556.62
hypothetical proteinAU359_00006Not Available+4955 - 530512039.4
iron-uptake system permease protein feubAU359_00007Q47085-5583 - 607716531.0

Displaying genes 1 – 10 of 2326 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

211 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 211 metabolites