Xanthomonas campestris pv. vitiscarnosae strain LMG939

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas campestris pv. vitiscarnosae strain LMG939 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, with an optimal growth temperature of 25.0°C. This strain exhibits aerobic respiration, indicating a reliance on oxygen for its metabolic processes. As a member of the Xanthomonas genus, this strain is part of a broader group known for their plant-associated lifestyles, often leading to significant interactions with host plants. The specific habitat and aerobic nature of Xanthomonas campestris pv. vitiscarnosae strain LMG939 suggest that it may play a role in the complex microbial communities associated with plant surfaces or within plant tissues. Understanding the ecological implications of this strain may provide insights into its interactions within these communities, potentially influencing plant health and microbiome dynamics. The association with hosts and its environmental preferences highlight the adaptability of this bacterium to specific ecological niches, emphasizing its potential role in the intricate network of plant-associated microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strainpv. vitiscarnosae strain LMG939

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. vitiscarnosae strain LMG939
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas campestris pv. vitiscarnosae strain LMG939


Gene Summary

Adenine Count

889179 bp

Thymine Count

898632 bp

Guanine Count

1643863 bp

Cytosine Count

1630586 bp

Genome Length

5062260 bp

Protein-coding Genes

3991 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+2006109 - 2006120Not Available
Phage-related integraseXvtr_11115Not Available-2006431 - 200744737751.3
Hypothetical proteinXvtr_11120Not Available-2007672 - 20079299342.16
hypothetical proteinXvtr_11125Not Available-2007887 - 20080968126.72
hypothetical proteinXvtr_11130Not Available-2008093 - 200836510373.5
hypothetical proteinXvtr_11135Not Available-2008362 - 20085868132.75
hypothetical proteinXvtr_11140Not Available-2008583 - 200885510200.2
hypothetical proteinXvtr_11145Not Available-2008848 - 20090306651.43
hypothetical proteinXvtr_11155Not Available-2009525 - 20097979884.44
hypothetical proteinXvtr_11160Not Available-2009797 - 20100699890.09

Displaying genes 1 – 10 of 4112 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

268 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da

Displaying 1–10 of 268 metabolites