Agrobacterium vitis strain NCPPB 3554

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Gillisella

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusGillisella
SpeciesGillisella vitis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium vitis strain NCPPB 3554

LMVL00000000.2

Gene Summary

Adenine Count

1205873 bp

Thymine Count

1237053 bp

Guanine Count

1678281 bp

Cytosine Count

1633284 bp

Genome Length

5754491 bp

Protein-coding Genes

4999 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycerol dehydrogenaseASB66_000380Not Available+92426 - 9354439353.2
sensor histidine kinaseASB66_000385Not Available-93574 - 9497749983.0
dna-binding response regulatorASB66_000390Not Available-94974 - 9565424539.8
abc transporter substrate-binding proteinASB66_000395Not Available+95770 - 9689141174.6
tripartite tricarboxylate transporter substrate binding proteinASB66_000400Not Available+97147 - 9809132020.6
tripartite tricarboxylate transporter tctb family proteinASB66_000405Not Available+98088 - 9858217433.7
tripartite tricarboxylate transporter permeaseASB66_000410Not Available+98605 - 10012252570.6
duf475 domain-containing proteinASB66_000415Not Available-100708 - 10176938350.6
3-oxoadipyl-coa thiolaseASB66_000425Not Available-102166 - 10337141887.2
coa transferase subunit bASB66_000430Not Available-103381 - 10407024534.6

Displaying genes 81 – 90 of 5052 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

78 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da

Displaying 1–10 of 78 metabolites