Pseudorhodoferax sp. Leaf267

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Pseudorhodoferax

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusPseudorhodoferax
SpeciesPseudorhodoferax sp. Leaf267
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudorhodoferax sp. Leaf267

LMMV00000000.1

Gene Summary

Adenine Count

1016101 bp

Thymine Count

1024762 bp

Guanine Count

2254247 bp

Cytosine Count

2235084 bp

Genome Length

6530331 bp

Protein-coding Genes

5708 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
competence protein comlASF43_00060Q9JVB7Negative9265 - 1003228965.1
pseudouridine synthaseASF43_00065Q8XYX8Positive10122 - 1109335104.4
segregation and condensation protein bASF43_00070Q83CP9Positive11222 - 1196526528.2
pseudouridine synthaseASF43_00075Q8X4Q8Positive11962 - 1340450913.1
nucleoside diphosphate kinaseASF43_00080B9MFX2Positive13559 - 1398415331.5
23s rrna (adenine(2503)-c2)-methyltransferaseASF43_00085A1TM24Positive14080 - 1522241927.5
pilus assembly protein pilwASF43_00090Not AvailablePositive15228 - 1606131355.0
hypothetical proteinASF43_00095Not AvailablePositive16054 - 1691429200.4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseASF43_00100B4EAW9Positive16917 - 1818845400.9
histidine--trna ligaseASF43_00105A1W578Positive18194 - 1953149170.8

Displaying genes 11 – 20 of 5759 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

395 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da

Displaying 1–10 of 395 metabolites

Health Effects

No health effects information available for this bacterium.