Sphingomonas sp. Leaf32

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf32 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The genetic information for Sphingomonas sp. Leaf32 can be accessed through the accession number LMLA00000000.1. In the broader ecological context, Sphingomonas species are often found in diverse environments, including soil and plant-associated habitats. Their rod shape and flagella suggest that they are well-suited for navigating complex microenvironments, potentially allowing them to colonize plant surfaces or rhizospheres effectively. This motility may enhance their interactions with plant roots, where they can play a role in nutrient cycling or plant health. The presence of a single replicon may also be indicative of a specialized ecological niche, as organisms with simpler genomic arrangements can sometimes exhibit faster growth rates or more efficient resource utilization. This trait can offer insights into the evolutionary strategies of Sphingomonas sp. Leaf32, particularly in its ability to thrive in specific ecological conditions. Overall, Sphingomonas sp. Leaf32 exemplifies the adaptive features of microorganisms that allow them to occupy various ecological niches, underscoring the importance of bacterial motility and genomic organization in their survival and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf32
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf32
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf32


Gene Summary

Adenine Count

651787 bp

Thymine Count

654493 bp

Guanine Count

1319652 bp

Cytosine Count

1320339 bp

Genome Length

3946283 bp

Protein-coding Genes

3482 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASE83_00085Not AvailablePositive5996 - 652018665.1
hypothetical proteinASE83_00090Not AvailablePositive6891 - 776932883.3
Trna-argNot AvailableNot AvailablePositive7841 - 7917Not Available
endonuclease iiiASE83_00100Q92GH4Negative7970 - 863224236.4
4-hydroxy-tetrahydrodipicolinate reductaseASE83_00105Q5NPM9Negative8629 - 935724676.4
hypothetical proteinASE83_00110Not AvailableNegative9507 - 97769951.07
hypothetical proteinASE83_00115Not AvailableNegative9915 - 1043618231.1
hypothetical proteinASE83_00120Not AvailablePositive10644 - 1145628939.7
camphor resistance protein crcbASE83_00125Q98N26Positive11491 - 1184711770.6
rna pseudouridine synthaseASE83_00130P74346Positive11844 - 1293839867.5

Displaying genes 31 – 40 of 3545 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

245 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 245 metabolites

Health Effects

No health effects information available for this bacterium.