Pseudomonas fluorescens strain S613

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain S613 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is an aerobic heterotroph, meaning it requires oxygen for growth and utilizes organic compounds for energy. It thrives optimally at a temperature of 25.0°C, indicating its adaptability to moderate environmental conditions. The versatility in habitat suggests that P. fluorescens strain S613 can occupy various ecological niches, potentially contributing to its role in soil and water environments. Its ability to metabolize diverse organic substrates may facilitate its involvement in nutrient cycling, particularly in decomposing organic matter. This metabolic flexibility and aerobic nature may also enhance its competitive advantage over other microbial species in oxygen-rich conditions. Understanding the physiological traits of Pseudomonas fluorescens strain S613 underscores its potential significance in bioremediation and agricultural applications, where its heterotrophic capabilities can be harnessed to degrade pollutants or improve soil health. The ecological insights derived from this strain highlight its function in maintaining ecosystem balance and its adaptability to various environmental conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain S613

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain S613
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas fluorescens strain S613


Gene Summary

Adenine Count

1362493 bp

Thymine Count

1360473 bp

Guanine Count

2001009 bp

Cytosine Count

2009929 bp

Genome Length

6733904 bp

Protein-coding Genes

6195 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
maoc like domain proteinAN403_6198O53664Negative63654 - 6450831373.9
short chain dehydrogenase family proteinAN403_6199I6Y778Negative64511 - 6586347603.4
acetyl-coa c-acyltransferase family proteinAN403_6200A7FGK0Positive66099 - 6737645273.6
methyl-accepting chemotaxis (mcp) signaling domain proteinAN403_6201Q88KP1Negative67514 - 6946070425.2
rio1 family proteinAN403_6202D4GYY1Positive69907 - 7080033007.5
membrane motb of proton-channel complex mota/motb family proteinAN403_6190P55892Negative71312 - 7231936868.8
flagellar motor stator protein motaAN403_6191P55891Negative72323 - 7317430206.2
hdod domain proteinAN403_6192Not AvailablePositive73341 - 7487957534.6
rhodanese-like domain proteinAN403_6193Q9HUK9Positive74921 - 7573629395.1
phosphatidylserine decarboxylaseAN403_6194C3KDM6Positive75755 - 7661531464.2

Displaying genes 71 – 80 of 6270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

412 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 412 metabolites

Health Effects

Health ConditionRelationReference
Bacterial infectionsCausesPMC7578172

Displaying health effects 1 – 1 of 1 in total