Pseudomonas fluorescens strain S613

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain S613 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is an aerobic heterotroph, meaning it requires oxygen for growth and utilizes organic compounds for energy. It thrives optimally at a temperature of 25.0°C, indicating its adaptability to moderate environmental conditions. The versatility in habitat suggests that P. fluorescens strain S613 can occupy various ecological niches, potentially contributing to its role in soil and water environments. Its ability to metabolize diverse organic substrates may facilitate its involvement in nutrient cycling, particularly in decomposing organic matter. This metabolic flexibility and aerobic nature may also enhance its competitive advantage over other microbial species in oxygen-rich conditions. Understanding the physiological traits of Pseudomonas fluorescens strain S613 underscores its potential significance in bioremediation and agricultural applications, where its heterotrophic capabilities can be harnessed to degrade pollutants or improve soil health. The ecological insights derived from this strain highlight its function in maintaining ecosystem balance and its adaptability to various environmental conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain S613

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain S613
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas fluorescens strain S613


Gene Summary

Adenine Count

1362493 bp

Thymine Count

1360473 bp

Guanine Count

2001009 bp

Cytosine Count

2009929 bp

Genome Length

6733904 bp

Protein-coding Genes

6195 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
periplasmic binding domain proteinAN403_811P02924Negative6014046 - 601505035708.0
short chain dehydrogenase family proteinAN403_812Not AvailableNegative6015180 - 601599829623.7
smp-30/gluconolaconase/lre-like region family proteinAN403_813Not AvailableNegative6016273 - 601714831699.8
bacterial regulatory s, gntr family proteinAN403_814P31475Negative6017276 - 601799226233.6
hypothetical proteinAN403_815Not AvailableNegative6018085 - 601864520641.8
putative lipoproteinAN403_816Not AvailableNegative6018662 - 601927022385.8
molybdenum cofactor synthesis c family proteinAN403_817Q55369Negative6019394 - 602036235154.0
bacterial regulatory s, tetr family proteinAN403_818Not AvailableNegative6020500 - 602113824962.0
hydrolase, tatd family proteinAN403_819P0AFQ9Negative6021481 - 602226628724.1
dna polymerase iii, delta' subunitAN403_820P52024Negative6022339 - 602332536399.3

Displaying genes 5561 – 5570 of 6270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

412 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 412 metabolites

Health Effects

Health ConditionRelationReference
Bacterial infectionsCausesPMC7578172

Displaying health effects 1 – 1 of 1 in total