Pseudomonas syringae pv. daphniphylli strain ICMP9757

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. daphniphylli strain ICMP9757 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds, which allows it to thrive in various habitats. As an aerobic organism, P. syringae pv. daphniphylli strain ICMP9757 requires oxygen for its metabolic processes, further influencing its ecological distribution and interactions within different environments. The versatility of P. syringae pv. daphniphylli strain ICMP9757 in utilizing a range of organic materials for energy supports its presence in multiple habitats, potentially contributing to its role in nutrient cycling. This adaptability suggests that the strain may play a significant part in the microbial community dynamics of its environments, reflecting the broader ecological implications of heterotrophic bacteria in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. daphniphylli strain ICMP9757

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. daphniphylli strain ICMP9757
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityPlant

Genome Summary

Pseudomonas syringae pv. daphniphylli strain ICMP9757


Gene Summary

Adenine Count

1240842 bp

Thymine Count

1239007 bp

Guanine Count

1725726 bp

Cytosine Count

1724538 bp

Genome Length

5933360 bp

Protein-coding Genes

5410 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Glycoside hydrolase family 19 proteinALO73_00248O64203-2243722 - 224426719921.0
tail fiber assembly domain proteinALO73_101212Not Available-2244510 - 224502219180.7
Tail fiber assembly proteinALO73_100762Not Available-2245361 - 224592720982.8
Putative phage-related tail fiber proteinALO73_00249Not Available-2245935 - 224739551833.0
Tail proteinALO73_00250Not Available-2247406 - 224800522279.7
Tail proteinALO73_00251P75981-2247993 - 224903336981.8
Putative tail proteinALO73_00252P44239-2249023 - 224942115355.1
Putative base plate assembly proteinALO73_00253Not Available-2249418 - 224993017951.6
Tail proteinALO73_00254Not Available-2249927 - 225105441205.7
Tail/dna circulation proteinALO73_00255Not Available-2251058 - 225240748290.5

Displaying genes 1 – 10 of 5464 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

319 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 319 metabolites