Viridibacillus arvi strain DSM 16317

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Caryophanaceae

Genus

Viridibacillus

Description

Viridibacillus arvi strain DSM 16317 is a rod-shaped, spore-forming bacterium exhibiting characteristics typical of both Gram-negative and Gram-positive bacteria. This unique classification suggests a complex cell wall structure that may offer insights into its resilience and adaptability in various environments. As an anaerobic organism, V. arvi strain DSM 16317 thrives in oxygen-depleted conditions, potentially making it an important player in anaerobic ecosystems, such as those found in soil or within the digestive tracts of certain animals. The ability to form spores is particularly notable, as this trait enhances the bacterium's survival under challenging environmental conditions, allowing it to withstand extreme desiccation, heat, and nutrient scarcity. This sporulation capability may also facilitate its dispersal in habitats where resources are transient or limited. Given its anaerobic nature and spore-forming ability, Viridibacillus arvi strain DSM 16317 may occupy a niche that contributes to the cycling of nutrients in anaerobic environments. Its presence in such habitats could play a role in the degradation of organic matter and the potential biogeochemical processes, underscoring the importance of understanding this microbe in the context of ecological interactions and microbial community dynamics. Further research into its metabolic pathways and interactions within its ecosystem may reveal additional ecological functions that are yet to be explored.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyCaryophanaceae
GenusViridibacillus
SpeciesViridibacillus arvi
Strainstrain DSM 16317

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Viridibacillus arvi strain DSM 16317


Gene Summary

Adenine Count

1467863 bp

Thymine Count

1569810 bp

Guanine Count

770970 bp

Cytosine Count

890585 bp

Genome Length

4758570 bp

Protein-coding Genes

4275 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
23s ribosomal rnaNot AvailableNot Available+8 - 2948Not Available
16s ribosomal rnaNot AvailableNot Available+40 - 1596Not Available
hypothetical proteinAMD00_00005Not Available+533 - 101518480.5
16s ribosomal rnaNot AvailableNot Available+3385 - 4941Not Available
histidine kinaseAMD00_00015Q9K620-2378 - 341840788.4
chemotaxis protein cheyAMD00_00020P42421-3415 - 409225695.5
abc transporter permeaseAMD00_00025Not Available-4103 - 615777332.1
abc transporterAMD00_00030Not Available-6147 - 692928377.5
hypothetical proteinAMD00_00035Not Available+7372 - 792921457.3
hypothetical proteinAMD00_00040Not Available+8314 - 874516820.1

Displaying genes 1 – 10 of 4338 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

231 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 231 metabolites