Escherichia coli strain BIDMC112

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain BIDMC112 is a Gram-negative, rod-shaped bacterium that is typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the normal body temperature of many warm-blooded hosts, suggesting a close association with host environments. As a facultative anaerobe, E. coli strain BIDMC112 can adapt to both aerobic and anaerobic conditions, enabling it to survive in diverse environments, including the gastrointestinal tracts of hosts. The habitat of E. coli strain BIDMC112 is primarily host-associated, indicating its potential role in the microbiota of specific organisms. This association may be significant for understanding its interactions within the host's microbiome, as it could contribute to various metabolic processes or influence host health. The adaptability of this strain to different oxygen levels suggests a versatile metabolic capability, allowing it to thrive in fluctuating conditions within the host. Overall, the traits of E. coli strain BIDMC112 underscore its potential ecological role as a commensal organism within host-associated environments, where it may participate in nutrient cycling and contribute to the maintenance of microbial balance. Further studies could elucidate its specific functions and interactions within the host microbiome, providing insights into its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain BIDMC112

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain BIDMC112
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain BIDMC112


Gene Summary

Adenine Count

1283364 bp

Thymine Count

1281198 bp

Guanine Count

1324998 bp

Cytosine Count

1318883 bp

Genome Length

5208446 bp

Protein-coding Genes

4697 genes

Non-Coding Genes

378 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+301889 - 301900Not Available
IntegraseSK85_00276P04890-302196 - 30305033185.1
Hypothetical proteinSK85_00277P76516-303277 - 30358212133.4
Hypothetical proteinSK85_00278P76515-303582 - 30394413672.3
Hypothetical proteinSK85_00279P76514-303935 - 30447120272.5
Hypothetical proteinSK85_00280P76513-304599 - 30542330488.2
Hypothetical proteinSK85_00281P76512-305489 - 30585113088.6
Prophage repressorSK85_00282P18680-306554 - 30720123770.4
Putative antirepressor croSK85_00283Not Available+307344 - 3076049736.61
Transcriptional regulatorSK85_00284P75976+307597 - 30815420168.7

Displaying genes 1 – 10 of 5075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

319 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 319 metabolites