Sphingomonas endophytica strain NS334

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas endophytica strain NS334 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and exhibits optimal growth at a temperature of 29.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for survival and reproduction in its environmental niche. The Gram-negative cell wall structure of S. endophytica strain NS334 is indicative of its potential interactions with other microbial communities and its environmental resilience. The rod shape may confer advantages in motility and nutrient acquisition, allowing the bacterium to effectively navigate through various substrates. Given its aerobic requirement, S. endophytica strain NS334 likely plays a role in biogeochemical cycles, particularly in environments where oxygen is readily available. The optimal growth temperature of 29.0°C suggests that it may be well adapted to moderate climates or specific ecological niches where such conditions prevail. This combination of traits positions S. endophytica strain NS334 as a potentially significant player in its ecosystem, possibly contributing to the degradation of organic material or the cycling of nutrients within its habitat. Further investigation into its metabolic pathways and interactions with other microorganisms could unveil novel ecological roles that this strain occupies within its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas endophytica
Strainstrain NS334

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingomonas endophytica strain NS334
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas endophytica strain NS334


Gene Summary

Adenine Count

587302 bp

Thymine Count

585069 bp

Guanine Count

1228698 bp

Cytosine Count

1240585 bp

Genome Length

3641654 bp

Protein-coding Genes

3283 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinNS334_01165Not Available+232790 - 23328418191.6
hypothetical proteinNS334_01170Not Available+233271 - 23375918115.2
hypothetical proteinNS334_01175Not Available+233907 - 23440117797.0
Large packaging proteinNS334_01180Not Available+234398 - 23570545744.7
Portal proteinNS334_01185Q1RIH4+236101 - 23717738442.2
Hypothetical proteinNS334_01190Not Available+237174 - 23749110917.3
Putative prohead proteaseNS334_01195Not Available+237488 - 23785613147.0
Putative major capsid proteinNS334_01200Not Available+237886 - 23889935337.8
hypothetical proteinNS334_01205Not Available+239067 - 23957917234.7
hypothetical proteinNS334_01210Not Available+239749 - 24011713089.0

Displaying genes 1 – 10 of 3341 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

259 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 259 metabolites