Pseudoxanthomonas dokdonensis strain DSM 21858

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Pseudoxanthomonas

Description

Pseudoxanthomonas dokdonensis strain DSM 21858 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic growth and is non-spore-forming. This organism exhibits optimal growth at a temperature of 29.0 °C, suggesting a preference for moderate temperature environments. As a member of the genus Pseudoxanthomonas, it is likely to play a role in various ecological contexts, although specific ecological interactions remain to be elucidated. The aerobic nature of Pseudoxanthomonas dokdonensis indicates its reliance on oxygen for metabolic processes, which aligns it with other environmental bacteria that contribute to nutrient cycling and organic matter decomposition. The absence of sporulation in this strain may reflect its adaptation to stable environments where the conditions for survival do not necessitate the formation of spores, which are typically a strategy for resilience in adverse conditions. Understanding the traits of Pseudoxanthomonas dokdonensis can provide insights into its potential applications in bioremediation or other biotechnological processes, particularly in oxygen-rich environments where its metabolic capabilities could be harnessed. Additionally, its optimal growth temperature suggests that it may thrive in environments that are characteristic of temperate climates, potentially influencing microbial community dynamics in such habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusPseudoxanthomonas
SpeciesPseudoxanthomonas dokdonensis
Strainstrain DSM 21858

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoxanthomonas dokdonensis strain DSM 21858


Gene Summary

Adenine Count

629888 bp

Thymine Count

632286 bp

Guanine Count

1148575 bp

Cytosine Count

1142909 bp

Genome Length

3553658 bp

Protein-coding Genes

3003 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
kinaseABB29_00105Not Available+21835 - 2249424760.6
nitrogen regulatory protein p-ii 1ABB29_00110Q9CJK1-22498 - 2283612158.9
hypothetical proteinABB29_00115Q46868+23012 - 232789908.84
atp-dependent proteaseABB29_00120P45049+23291 - 2479353299.2
5s ribosomal rnaNot AvailableNot Available+24993 - 25107Not Available
23s ribosomal rnaNot AvailableNot Available+25222 - 28113Not Available
isocitrate lyaseABB29_00125Q9K9H0-25145 - 2643446931.3
malate synthaseABB29_00130P95329-26480 - 2812060457.7
lysr family transcriptional regulatorABB29_00135Q3MCB5+28228 - 2919635799.3
16s ribosomal rnaNot AvailableNot Available+28596 - 30140Not Available

Displaying genes 21 – 30 of 3058 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

201 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 201 metabolites