Flagellimonas eckloniae strain DOKDO 007

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flagellimonas

Description

Flagellimonas eckloniae strain DOKDO 007 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at 29.0°C and requires aerobic conditions for growth. This strain is characterized by its motility, facilitated by flagella, which is typical of the genus Flagellimonas. The rod shape and aerobic nature indicate its adaptation to environments where oxygen is readily available, suggesting a potential role in nutrient cycling within its ecological niche. The specific temperature preference of 29.0°C may reflect a habitat that is consistently warm, likely associated with marine environments, given the genus's known associations with seaweed and other aquatic organisms. This implies that Flagellimonas eckloniae strain DOKDO 007 could be involved in interactions with its surroundings, potentially influencing the microbial community dynamics in coastal ecosystems. The non-spore-forming trait suggests that this strain may be more sensitive to environmental changes compared to spore-forming bacteria, which can endure harsher conditions. As such, the persistence of Flagellimonas eckloniae in its habitat may depend on stable environmental conditions, which could have implications for its survival and ecological interactions, particularly in the context of climate variability and ocean temperature changes. This highlights the importance of understanding the specific ecological roles of such microorganisms within their habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlagellimonas
SpeciesFlagellimonas eckloniae
Strainstrain DOKDO 007

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flagellimonas eckloniae strain DOKDO 007


Gene Summary

Adenine Count

1274072 bp

Thymine Count

1294190 bp

Guanine Count

771244 bp

Cytosine Count

792773 bp

Genome Length

4132279 bp

Protein-coding Genes

3385 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
serine/threonine protein phosphataseAAY42_00010Not Available+2342 - 323835159.7
penicillin epimeraseAAY42_00015Not Available-3242 - 450448069.7
hypothetical proteinAAY42_00020Not Available+4601 - 577345222.9
hypothetical proteinAAY42_00035Not Available-7733 - 890545222.9
penicillin epimeraseAAY42_00040Not Available+9002 - 1026448069.7
cell surface proteinAAY42_00050Not Available+11284 - 1365692249.1
hypothetical proteinAAY42_00055Not Available-13679 - 138777558.34
hypothetical proteinAAY42_00085Not Available+17427 - 1769310508.0
dihydroorotate dehydrogenaseAAY42_00090Not Available+17748 - 1878538553.2
hypothetical proteinAAY42_00095Not Available-18792 - 2080174238.0

Displaying genes 1 – 10 of 3431 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

179 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 179 metabolites