Bifidobacterium bifidum strain 85B

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium bifidum strain 85B is a Gram-positive, non-sporulating rod-shaped bacterium that is predominantly associated with host environments, indicating its role as a commensal organism in the gastrointestinal tract of mammals. As an anaerobe, this strain thrives in low-oxygen conditions, which is typical for the intestinal microbiota, where it contributes to the complex microbial ecosystem. B. bifidum strain 85B is known for its potential beneficial effects on gut health, including the fermentation of dietary fibers and production of short-chain fatty acids, which may play a role in maintaining gut homeostasis. Given its habitat within the host, this bacterium is likely involved in various symbiotic interactions that support host nutrition and immune function. The unique adaptation of B. bifidum strain 85B to anaerobic environments showcases its evolutionary specialization within the gut microbiome, where it likely engages in metabolic processes that are crucial for both microbial community dynamics and host health. Understanding the specific metabolic pathways utilized by this strain could provide insights into its contributions to gut microbiota stability and overall host well-being.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium bifidum
Strainstrain 85B

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Bifidobacterium bifidum strain 85B
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium bifidum strain 85B


Gene Summary

Adenine Count

435710 bp

Thymine Count

438631 bp

Guanine Count

744208 bp

Cytosine Count

742413 bp

Genome Length

2360966 bp

Protein-coding Genes

1842 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail length tape-measure proteinB0085_0471Not Available+557432 - 55935765995.4
hypothetical proteinB0085_0472Not Available+559354 - 56082954779.6
tail fiber proteinB0085_0473Not Available+560826 - 56167730033.5
Hypothetical proteinB0085_0474Not Available+561691 - 56204712877.7
EndolysinB0085_0475Not Available+562059 - 56283527879.7
Putative integraseB0085_0476Q89X68-562832 - 56354526157.2
IntegraseB0085_0477Q4UYY0+563921 - 56470028796.6
hypothetical proteinB0085_0478Not Available+564711 - 56501312052.7
hypothetical proteinB0085_0479Not Available+565033 - 56534411587.6
holinB0085_0480Not Available-565407 - 5656438030.62

Displaying genes 1 – 10 of 1915 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

110 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 110 metabolites