Flavobacterium rivuli WB 3.3-2 = DSM 21788 strain WB 3.3-2

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium rivuli WB 3.3-2 (DSM 21788) is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 16.0°C. This strain belongs to the genus Flavobacterium, known for its diverse ecological roles, particularly in aquatic environments. As a member of the Flavobacteriaceae family, F. rivuli WB 3.3-2 may contribute to the decomposition of organic matter, playing a significant role in nutrient cycling within its ecological niche. The Gram-negative cell wall structure of F. rivuli WB 3.3-2 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may provide advantages in specific habitats by facilitating interactions with other microbial communities. Its rod shape is typical of many members of this genus, allowing for efficient motility and nutrient uptake in aqueous environments. Given its optimal growth temperature of 16.0°C, F. rivuli WB 3.3-2 is likely adapted to cooler aquatic habitats, such as freshwater lakes or rivers. This temperature preference suggests that it may play an essential role in the microbial communities of cold-water ecosystems, where it could influence the decomposition processes and the overall carbon cycle. Understanding the ecological functions of this strain may provide insights into the dynamics of microbial communities in similar environments, highlighting the significance of temperature in shaping microbial diversity and activity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium rivuli
StrainWB 3.3-2 = DSM 21788 strain WB 3.3-2

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Image of Flavobacterium rivuli WB 3.3-2 = DSM 21788 strain WB 3.3-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium rivuli WB 3.3-2 = DSM 21788 strain WB 3.3-2


Gene Summary

Adenine Count

1347014 bp

Thymine Count

1358158 bp

Guanine Count

891032 bp

Cytosine Count

883768 bp

Genome Length

4479972 bp

Protein-coding Genes

3691 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
membrane proteinQ765_00005Not Available+1 - 239587136.9
5s ribosomal rnaNot AvailableNot Available+160 - 268Not Available
23s ribosomal rnaNot AvailableNot Available+226 - 3112Not Available
16s ribosomal rnaNot AvailableNot Available+261 - 1786Not Available
membrane proteinQ765_00010Not Available+2407 - 390655670.0
hypothetical proteinQ765_00015Not Available+3920 - 547955813.2
laminarinaseQ765_00020Not Available+5487 - 713659240.8
beta-glucosidaseQ765_00025Not Available+7226 - 952683461.1
laminarinaseQ765_00030Not Available+9540 - 1030428821.3
3-deoxy-manno-octulosonate cytidylyltransferaseQ765_00035Not Available-10503 - 1122827286.8

Displaying genes 1 – 10 of 3740 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da

Displaying 1–1 of 1 metabolites