Lysobacter capsici AZ78 unitig_4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici AZ78 unitig_4 is a rod-shaped bacterium that has been isolated from chromium-contaminated environments, including water sources and the leaf surfaces of ready-to-eat lettuce plants. This microbe exhibits a notable adaptability to environments with elevated levels of chromium, suggesting a potential role in the bioremediation of contaminated water and agricultural systems. The presence of L. capsici AZ78 unitig_4 in chromium-contaminated plant water indicates its capacity to survive and possibly thrive in environments altered by anthropogenic activities. The isolation of this bacterium from the leaf of a lettuce plant highlights its potential interactions within agricultural ecosystems, particularly in relation to plant health and contamination effects. While the specific interactions between L. capsici AZ78 unitig_4 and the lettuce plant remain to be fully elucidated, its habitat preferences suggest a possible role in the microbial communities associated with plants grown in contaminated settings. Understanding the ecological roles and potential applications of L. capsici AZ78 unitig_4 could provide insights into its utility in bioremediation efforts, particularly in mitigating the effects of heavy metal contamination on crop production and food safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
StrainAZ78 unitig_4

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici AZ78 unitig_4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici AZ78 unitig_4


Gene Summary

Adenine Count

1048103 bp

Thymine Count

1042384 bp

Guanine Count

2086961 bp

Cytosine Count

2092676 bp

Genome Length

6270124 bp

Protein-coding Genes

5260 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Atp-dependent clp protease proteolytic subunitAZ78_1272Not Available-1569700 - 157033823375.2
cell division trigger factorAZ78_1273Not Available-1570530 - 157183148653.9
Trna,type:pseudo,anti_codon:tag;Not AvailableNot Available+1572247 - 1572330Not Available
Putative dna-dependent rna polymerase proteinAZ78_1274Not Available+1572870 - 157511681786.1
hypothetical proteinAZ78_1275Not Available+1575156 - 15752934922.74
hypothetical proteinAZ78_1276Not Available+1575471 - 15756747315.85
hypothetical proteinAZ78_1277Not Available+1575671 - 15758295750.62
Putative single-stranded dna-binding proteinAZ78_1278Not Available+1575804 - 157646924265.4
Holliday-junction resolvase rusaAZ78_1279Not Available+1576699 - 15769208144.71
Hypothetical proteinAZ78_1280Not Available+1577294 - 157767714828.3

Displaying genes 1 – 10 of 5346 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites