Sphingorhabdus marina DSM 22363

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Parasphingorhabdus

Description

Sphingorhabdus marina DSM 22363 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria and influences its interaction with the environment. This organism's adaptation to aerobic conditions suggests a metabolic pathway that relies on oxygen as a terminal electron acceptor, which may confer advantages in specific ecological niches, such as marine environments where oxygen levels can vary. The optimal growth temperature of 29.0°C suggests that Sphingorhabdus marina is well-suited to thrive in temperate marine habitats, potentially influencing local microbial communities and contributing to biogeochemical cycles. Given its specific traits, Sphingorhabdus marina may play a role in nutrient cycling in marine ecosystems, particularly in the degradation of organic matter. Understanding the physiological characteristics of this bacterium can provide insights into its ecological functions and potential applications in biotechnology, particularly in processes that occur in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusParasphingorhabdus
SpeciesParasphingorhabdus marina
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus marina DSM 22363

Accession NumberFSQW00000000.1

Gene Summary

Adenine Count

758321 bp

Thymine Count

754436 bp

Guanine Count

1018748 bp

Cytosine Count

1016423 bp

Genome Length

3547928 bp

Protein-coding Genes

3382 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc-2 type transport system atp-binding proteinSAMN02745824_3140Not Available+3208494 - 320942934259.1
l-aspartate oxidaseSAMN02745824_3141Not Available+3209426 - 321102158493.4
pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing proteinSAMN02745824_3142Not Available-3211078 - 321325280253.0
nitroreductaseSAMN02745824_3143Not Available+3213407 - 321408424839.6
acyl-homoserine-lactone acylaseSAMN02745824_3144Not Available-3214118 - 321631381312.6
leucyl aminopeptidaseSAMN02745824_3145Not Available+3216455 - 321803254530.2
atp-dependent clp protease atp-binding subunit clpbSAMN02745824_3146Not Available+3218125 - 322070494296.9
zn-dependent dipeptidase, dipeptidase homologSAMN02745824_3147Not Available+3220735 - 322186240733.8
proline 4-hydroxylase (includes rps23 pro-64 3,4-dihydroxylase tpa1), contains sm-20 domainSAMN02745824_3148Not Available+3221895 - 322263227782.7
tonb-dependent receptor plug domainSAMN02745824_3149Not Available-3222745 - 3225768107728.0

Displaying genes 3121 – 3130 of 3446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites