Fabibacter pacificus strain CGMCC 1.12402

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Roseivirgaceae

Genus

Roseivirga

Description

Fabibacter pacificus strain CGMCC 1.12402 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain thrives at an optimal temperature of 37.0°C, indicating a preference for mesophilic conditions typically found in warm environments. The Gram-negative nature of F. pacificus suggests a complex cell wall structure, which may contribute to its adaptability in various ecological niches. As an aerobic organism, F. pacificus requires oxygen for growth and metabolism, which implicates its potential role in environments where oxygen is readily available. This aerobic characteristic may facilitate its involvement in biogeochemical cycles, particularly those involving carbon and nitrogen, in marine or estuarine ecosystems. The ability to thrive at 37.0°C also suggests that F. pacificus may inhabit environments influenced by warm water sources or thermal gradients. Overall, the traits of Fabibacter pacificus strain CGMCC 1.12402 indicate its capability to occupy specific ecological niches where temperature and oxygen levels align with its growth requirements. This highlights its potential importance in microbial communities, particularly in contexts where aerobic processes are critical for nutrient cycling and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyRoseivirgaceae
GenusRoseivirga
SpeciesRoseivirga pacifica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fabibacter pacificus strain CGMCC 1.12402

Accession NumberFOIR00000000.1

Gene Summary

Adenine Count

1371905 bp

Thymine Count

1333517 bp

Guanine Count

958689 bp

Cytosine Count

996660 bp

Genome Length

4660771 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trigger factorSAMN05216290_0011Not Available+10613 - 1193850651.9
atp-dependent clp protease proteolytic subunit clppSAMN05216290_0012Not Available+12023 - 1269124914.1
atp-dependent clp protease atp-binding subunit clpxSAMN05216290_0013Not Available+12696 - 1392245555.9
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthaseSAMN05216290_0014Not Available-13983 - 1439916019.3
adp-glyceromanno-heptose 6-epimerase precursorSAMN05216290_0015Not Available+14469 - 1543436974.8
anti-sigma-k factor rskaSAMN05216290_0016Not Available-15457 - 1626329114.2
rna polymerase sigma-70 factor, ecf subfamilySAMN05216290_0017Not Available-16265 - 1681921115.5
dihydrolipoamide dehydrogenaseSAMN05216290_0018Not Available-16824 - 1821849464.6
3-oxoacyl-[acyl-carrier-protein] reductaseSAMN05216290_0019Not Available+18384 - 1913026032.3
hypothetical proteinSAMN05216290_0020Not Available+19238 - 2132577663.3

Displaying genes 11 – 20 of 4073 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites