Prevotella ruminicola strain D31d

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Xylanibacter

Description

Prevotella ruminicola strain D31d is a Gram-negative, rod-shaped bacterium that is nonsporulating and classified as an anaerobe, indicating its growth is optimized in environments devoid of oxygen. This microbe is predominantly host-associated, suggesting a symbiotic relationship with its host organisms, likely contributing to complex microbial communities within the digestive tracts of ruminant animals, such as cattle and sheep. The anaerobic nature of Prevotella ruminicola strain D31d plays a crucial role in the fermentation processes occurring in the rumen, where it may assist in the breakdown of fibrous plant materials. This breakdown is essential for the efficient digestion and nutrient absorption in ruminants, highlighting the bacterium's potential importance in the overall health and productivity of its host. Furthermore, the characteristics of this strain suggest it may engage in synergistic interactions with other microbial species present in the rumen, contributing to a balanced microbial ecosystem that supports metabolic processes essential for the host's nutrition. Understanding the specific roles and interactions of Prevotella ruminicola strain D31d within these microbial communities could provide insights into improving ruminant diet and health through targeted microbiome management strategies.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusXylanibacter
SpeciesXylanibacter ruminicola
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prevotella ruminicola strain D31d

Accession NumberFNRF00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3102 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trna threonylcarbamoyladenosine biosynthesis protein tsabSAMN05216462_0003Not Available+329 - 101825439.8
protein of unknown functionSAMN05216462_0004Not Available+1040 - 163023182.8
udp-n-acetylglucosamine 1-carboxyvinyltransferaseSAMN05216462_0005Not Available+1636 - 294047489.1
16s rrna processing protein rimmSAMN05216462_0006Not Available+2945 - 345419143.8
1-deoxy-d-xylulose 5-phosphate reductoisomeraseSAMN05216462_0007Not Available+3451 - 460842483.4
regulator of sigma e proteaseSAMN05216462_0008Not Available+4615 - 601552419.7
beta-galactosidaseSAMN05216462_0009Not Available-6174 - 839384240.3
beta-galactosidase/beta-glucuronidaseSAMN05216462_0010Not Available-8395 - 13017177344.0
hypothetical proteinSAMN05216462_0011Not Available-13027 - 1362622096.8
starch-binding associating with outer membraneSAMN05216462_0012Not Available-13659 - 1533262946.1

Displaying genes 1 – 10 of 3102 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

219 records
Metabolite IDMetabolite nameStructureCAS number
BASm0009937Adenosine diphosphate riboseC15H23N5O14P2Chemical structure of Adenosine diphosphate ribose20762-30-5
Average559.3157Da
Monoisotopic559.0716735Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da
BASm0014036Glyoxylic acidC2H2O3Chemical structure of Glyoxylic acid298-12-4
Average74.0355Da
Monoisotopic74.00039393Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014039L-Lactic acidC3H6O3Chemical structure of L-Lactic acid79-33-4
Average90.0779Da
Monoisotopic90.031694058Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da

Displaying 41–50 of 219 metabolites