Prevotella ruminicola strain D31d

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Xylanibacter

Description

Prevotella ruminicola strain D31d is a Gram-negative, rod-shaped bacterium that is nonsporulating and classified as an anaerobe, indicating its growth is optimized in environments devoid of oxygen. This microbe is predominantly host-associated, suggesting a symbiotic relationship with its host organisms, likely contributing to complex microbial communities within the digestive tracts of ruminant animals, such as cattle and sheep. The anaerobic nature of Prevotella ruminicola strain D31d plays a crucial role in the fermentation processes occurring in the rumen, where it may assist in the breakdown of fibrous plant materials. This breakdown is essential for the efficient digestion and nutrient absorption in ruminants, highlighting the bacterium's potential importance in the overall health and productivity of its host. Furthermore, the characteristics of this strain suggest it may engage in synergistic interactions with other microbial species present in the rumen, contributing to a balanced microbial ecosystem that supports metabolic processes essential for the host's nutrition. Understanding the specific roles and interactions of Prevotella ruminicola strain D31d within these microbial communities could provide insights into improving ruminant diet and health through targeted microbiome management strategies.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusXylanibacter
SpeciesXylanibacter ruminicola
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prevotella ruminicola strain D31d

Accession NumberFNRF00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3102 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trna threonylcarbamoyladenosine biosynthesis protein tsabSAMN05216462_0003Not Available+329 - 101825439.8
protein of unknown functionSAMN05216462_0004Not Available+1040 - 163023182.8
udp-n-acetylglucosamine 1-carboxyvinyltransferaseSAMN05216462_0005Not Available+1636 - 294047489.1
16s rrna processing protein rimmSAMN05216462_0006Not Available+2945 - 345419143.8
1-deoxy-d-xylulose 5-phosphate reductoisomeraseSAMN05216462_0007Not Available+3451 - 460842483.4
regulator of sigma e proteaseSAMN05216462_0008Not Available+4615 - 601552419.7
beta-galactosidaseSAMN05216462_0009Not Available-6174 - 839384240.3
beta-galactosidase/beta-glucuronidaseSAMN05216462_0010Not Available-8395 - 13017177344.0
hypothetical proteinSAMN05216462_0011Not Available-13027 - 1362622096.8
starch-binding associating with outer membraneSAMN05216462_0012Not Available-13659 - 1533262946.1

Displaying genes 1 – 10 of 3102 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

219 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 219 metabolites