Pedobacter hartonius strain DSM 19033

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter hartonius strain DSM 19033 is a Gram-negative, non-spore-forming bacterium characterized by its rod-shaped morphology and optimal growth temperature of 16.0°C. This strain is part of the genus Pedobacter, which is known for its psychrotolerant properties, enabling it to thrive in cooler environments. The Gram-negative nature of P. hartonius indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. The non-spore-forming trait suggests that this bacterium relies on vegetative reproduction for survival, indicating potential sensitivity to environmental stresses that could otherwise be mitigated by sporulation in other genera. Given that P. hartonius is optimized for growth at lower temperatures, it may play a role in the microbial dynamics of cold habitats, such as soils and freshwater environments in temperate and polar regions. Its metabolic capabilities could contribute to nutrient cycling in these ecosystems, particularly in the breakdown of organic matter at cooler temperatures. This ecological role highlights the importance of studying psychrotolerant microorganisms like P. hartonius, as they are crucial for maintaining ecosystem functions in cold climates.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter hartonius
Strainstrain DSM 19033

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter hartonius strain DSM 19033


Gene Summary

Adenine Count

1480734 bp

Thymine Count

1474946 bp

Guanine Count

1102971 bp

Cytosine Count

1129882 bp

Genome Length

5188723 bp

Protein-coding Genes

4628 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative nucleaseSAMN05443550_101582Not Available+620805 - 62176735354.8
Prga-formyltransferaseSAMN05443550_101583Not Available+622143 - 62310836022.4
Minor tail proteinSAMN05443550_101584Not Available+623112 - 62363918208.7
Tail proteinSAMN05443550_101585Not Available+623647 - 62414116995.2
Minor tail proteinSAMN05443550_101586Not Available+624169 - 62469617920.2
Minor tail proteinSAMN05443550_101587Not Available+624867 - 632486255157.0
type ix secretion system membrane protein, porp/sprf familySAMN05443550_101588Not Available+632547 - 63342832236.3
hypothetical proteinSAMN05443550_101589Not Available+633666 - 6338396743.42
Glycerophosphoryldiester phosphodiesteraseSAMN05443550_101590Not Available+634068 - 63497033699.7
5s ribosomal rna . bacterial tsuNot AvailableNot Available+1 - 7218.01

Displaying genes 1 – 10 of 4693 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

221 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 221 metabolites

Health Effects

No health effects information available for this bacterium.