Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Thiotrichales
Family
Thiotrichaceae
Genus
Thiothrix
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Thiotrichales |
| Family | Thiotrichaceae |
| Genus | Thiothrix |
| Species | Thiothrix caldifontis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Thiothrix caldifontis strain DSM 21228
Accession NumberFNQP00000000.1
Gene Summary
Adenine Count
975519 bp
Thymine Count
966984 bp
Guanine Count
988017 bp
Cytosine Count
1001078 bp
Genome Length
3936903 bp
Protein-coding Genes
3767 genes
Non-Coding Genes
46 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mth538 tir-like domain | SAMN05660964_00480 | Not Available | - | 501434 - 502003 | 22074.1 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05660964_00481 | Not Available | - | 502039 - 502950 | 34625.6 |
| dna-damage-inducible protein d | SAMN05660964_00482 | Not Available | + | 503043 - 503435 | 14765.7 |
| l-lysine exporter family protein lyse/argo | SAMN05660964_00483 | Not Available | + | 503438 - 504058 | 22029.3 |
| amino acid abc transporter membrane protein 2, paat family (tc 3.a.1.3.-) | SAMN05660964_00484 | Not Available | - | 504037 - 504729 | 25556.7 |
| amino acid abc transporter membrane protein 1, paat family (tc 3.a.1.3.-) | SAMN05660964_00485 | Not Available | - | 504726 - 505412 | 25094.8 |
| arginine/ornithine transport system substrate-binding protein | SAMN05660964_00486 | Not Available | - | 505529 - 506308 | 27911.3 |
| amino acid abc transporter atp-binding protein, paat family (tc 3.a.1.3.-) | SAMN05660964_00487 | Not Available | - | 506326 - 507099 | 28546.7 |
| conserved hypothetical protein | SAMN05660964_00488 | Not Available | + | 507401 - 508075 | 23730.3 |
| urea transport system substrate-binding protein | SAMN05660964_00489 | Not Available | + | 508276 - 509586 | 48026.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.