Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Thiotrichales
Family
Thiotrichaceae
Genus
Thiothrix
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Thiotrichales |
| Family | Thiotrichaceae |
| Genus | Thiothrix |
| Species | Thiothrix caldifontis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Thiothrix caldifontis strain DSM 21228
Accession NumberFNQP00000000.1
Gene Summary
Adenine Count
975519 bp
Thymine Count
966984 bp
Guanine Count
988017 bp
Cytosine Count
1001078 bp
Genome Length
3936903 bp
Protein-coding Genes
3767 genes
Non-Coding Genes
46 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase/alpha-mannosidase, gh57 family | SAMN05660964_02978 | Not Available | - | 3079438 - 3081159 | 65210.5 |
| glucose-1-phosphate adenylyltransferase | SAMN05660964_02979 | Not Available | - | 3081141 - 3082469 | 49931.2 |
| glucokinase | SAMN05660964_02980 | Not Available | - | 3082466 - 3083455 | 35314.2 |
| glucose-6-phosphate isomerase | SAMN05660964_02981 | Not Available | - | 3083572 - 3085245 | 62303.0 |
| type iv fimbrial biogenesis protein fimt | SAMN05660964_02982 | Not Available | - | 3085415 - 3085927 | 18074.7 |
| trk system potassium uptake protein trkh | SAMN05660964_02983 | Not Available | - | 3086096 - 3087547 | 53148.1 |
| trk system potassium uptake protein trka | SAMN05660964_02984 | Not Available | - | 3087552 - 3088925 | 50484.5 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN05660964_02985 | Not Available | - | 3088935 - 3090314 | 52466.1 |
| signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation | SAMN05660964_02986 | Not Available | - | 3090326 - 3092500 | 81580.1 |
| protein of unknown function | SAMN05660964_02987 | Not Available | - | 3092485 - 3093060 | 22086.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.