Thiothrix caldifontis strain DSM 21228

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Thiotrichaceae

Genus

Thiothrix

Description

Thiothrix caldifontis strain DSM 21228 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This strain exhibits the typical morphological characteristics associated with the genus Thiothrix, which is known for its filamentous growth in various aquatic environments. As a member of the Thiothrix genus, this strain is likely involved in sulfur oxidation processes, which are fundamental to biogeochemical cycles in its natural habitats. Its aerobic nature suggests a reliance on oxygen for metabolic processes, potentially positioning it in environments where oxygen is readily available, such as surface waters or oxygenated sediments. The optimal growth temperature of 25.0°C indicates that Thiothrix caldifontis strain DSM 21228 may be well-suited to temperate environments or regions with moderate thermal conditions. Understanding the physiological traits of this strain contributes to a broader comprehension of microbial diversity in sulfur-rich ecosystems. The ecological role of this bacterium in sulfur cycling could provide insights into nutrient dynamics and the maintenance of ecosystem health in aquatic systems, highlighting the importance of microbial communities in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusThiothrix
SpeciesThiothrix caldifontis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiothrix caldifontis strain DSM 21228

Accession NumberFNQP00000000.1

Gene Summary

Adenine Count

975519 bp

Thymine Count

966984 bp

Guanine Count

988017 bp

Cytosine Count

1001078 bp

Genome Length

3936903 bp

Protein-coding Genes

3767 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
predicted purr-regulated permease permSAMN05660964_02918Not Available+3009502 - 301064741871.2
regulatory inactivation of dnaa hda proteinSAMN05660964_02919Not Available+3010644 - 301136927484.4
uncharacterized membrane protein yebe, duf533 familySAMN05660964_02920Not Available+3011371 - 301204223274.9
hypothetical proteinSAMN05660964_02921Not Available-3012102 - 30122877486.78
thiol:disulfide interchange protein dsbdSAMN05660964_02922Not Available-3012361 - 301466183457.4
dna-binding protein h-nsSAMN05660964_02923Not Available-3014997 - 301531711926.0
pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing proteinSAMN05660964_02924Not Available+3015588 - 301756774078.9
upf0716 protein fxsaSAMN05660964_02925Not Available+3017646 - 301811617337.7
chaperonin groesSAMN05660964_02926Not Available+3018215 - 301850510582.9
chaperonin groelSAMN05660964_02927Not Available+3018525 - 302016257263.1

Displaying genes 2911 – 2920 of 3813 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites